Os03g0334100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosynthetic reaction centre, H-chain, cytoplasmic domain containing protein.
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Os03g0334100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosynthetic reaction centre, H-chain, cytoplasmic domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.21 | 0.374 | 7.51 | 0.446 | 1.06 | 1.45 | -0.0363 | 0.216 | -0.116 | 19.4 | 20.84 | 7 | -- | -- |
| 62.7 | 0.372 | 7.5 | 0.451 | 1.06 | 1.29 | -0.0556 | -- | -0.101 | 19.4 | 21.62 | 6 | -- | -- |
| 62.67 | 0.372 | 7.5 | 0.464 | 1.06 | 1.24 | -- | -0.179 | -0.0972 | 19.4 | 21.75 | 6 | -- | -- |
| 62.69 | 0.371 | 7.5 | 0.452 | 1.06 | 1.28 | -- | -- | -0.0996 | 19.4 | 21.7 | 5 | -- | -- |
| 120.87 | 0.515 | 7.46 | 0.521 | -- | 1.13 | -- | -0.596 | -0.0665 | -- | 23.19 | 2 | -- | -- |
| 78.4 | 0.415 | 7.53 | 0.22 | 1.08 | -- | -0.187 | -- | -0.224 | 19.9 | -- | -- | -- | -- |
| 78.5 | 0.415 | 7.53 | 0.225 | 1.08 | -- | -- | -- | -0.225 | 19.9 | -- | -- | -- | -- |
| 121.35 | 0.515 | 7.47 | 0.454 | -- | 1.23 | -- | -- | -0.0828 | -- | 22.97 | 2 | -- | -- |
| 67.65 | 0.385 | 7.52 | -- | 1.06 | 1.08 | -- | -- | -0.166 | 19.5 | 21.7 | 5 | -- | -- |
| 141.97 | 0.557 | 7.51 | 0.213 | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
| 79.83 | 0.418 | 7.54 | -- | 1.08 | -- | -- | -- | -0.25 | 19.9 | -- | -- | -- | -- |
| 126.4 | 0.525 | 7.49 | -- | -- | 1.07 | -- | -- | -0.15 | -- | 22.97 | 2 | -- | -- |
| 143.16 | 0.558 | 7.51 | -- | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.33 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 3 | 57.37 | temperature | 25 | 10 | < th | dose dependent | sin | 13 | NA |
| 4 | 57.43 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 58 | 58.52 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 67 | 58.59 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 83 | 58.73 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 91 | 58.84 | temperature | 15 | 10 | > th | dose dependent | sin | 12 | NA |
| 132 | 59.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 13 |
| 148 | 59.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 149 | 59.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 189 | 60.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 246 | 60.63 | temperature | 20 | 30 | > th | dose independent | sin | 13 | NA |
| 260 | 60.68 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 310 | 60.83 | temperature | 20 | 10 | < th | dose independent | sin | 13 | NA |
| 314 | 60.83 | temperature | 20 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 362 | 60.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 370 | 60.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 524 | 61.42 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 12 |
| 543 | 61.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 11 |
| 551 | 61.52 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 12 |
| 567 | 61.58 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 14 |
| 644 | 61.86 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 8 |
| 655 | 61.89 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 14 |
| 697 | 61.99 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 1 |
| 859 | 62.35 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 16 |
| 869 | 62.36 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 17 |