Os03g0334000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal protein S6 kinase.
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Os03g0334000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal protein S6 kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.73 | 0.647 | 3.4 | -0.434 | 0.21 | -1.86 | -1.44 | 0.334 | -0.221 | 5.05 | 21 | 4482 | -- | -- |
| 189.87 | 0.642 | 3.41 | -0.501 | 0.212 | -1.91 | -1.43 | -- | -0.239 | 5.05 | 21.06 | 4490 | -- | -- |
| 194.96 | 0.65 | 3.39 | -0.437 | 0.197 | -1.86 | -- | 0.325 | -0.216 | 4.81 | 21.02 | 4514 | -- | -- |
| 195.1 | 0.651 | 3.41 | -0.506 | 0.198 | -1.9 | -- | -- | -0.233 | 4.8 | 21.06 | 4510 | -- | -- |
| 196.88 | 0.654 | 3.4 | -0.423 | -- | -1.86 | -- | 0.342 | -0.209 | -- | 21.08 | 4580 | -- | -- |
| 266.6 | 0.765 | 3.55 | -1.68 | 0.178 | -- | -1.33 | -- | -0.838 | 4.96 | -- | -- | -- | -- |
| 271.13 | 0.771 | 3.54 | -1.68 | 0.17 | -- | -- | -- | -0.832 | 5.07 | -- | -- | -- | -- |
| 197.03 | 0.654 | 3.41 | -0.495 | -- | -1.91 | -- | -- | -0.227 | -- | 21.07 | 4580 | -- | -- |
| 200.12 | 0.659 | 3.39 | -- | 0.263 | -2.13 | -- | -- | -0.163 | 4.59 | 21.04 | 4510 | -- | -- |
| 272.65 | 0.772 | 3.55 | -1.67 | -- | -- | -- | -- | -0.827 | -- | -- | -- | -- | -- |
| 345.56 | 0.87 | 3.5 | -- | 0.141 | -- | -- | -- | -0.645 | 5.48 | -- | -- | -- | -- |
| 201.39 | 0.661 | 3.38 | -- | -- | -2.17 | -- | -- | -0.11 | -- | 21 | 4586 | -- | -- |
| 346.59 | 0.869 | 3.5 | -- | -- | -- | -- | -- | -0.642 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.91 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 2 | 187.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 18 | 189.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 20 | 189.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 21 | 189.16 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 23 | 189.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 26 | 189.30 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 27 | 189.30 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 63 | 189.95 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 65 | 189.96 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 175 | 191.50 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 205 | 191.85 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 226 | 192.08 | temperature | 15 | 43200 | < th | dose dependent | rect. | 24 | 8 |
| 228 | 192.09 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 232 | 192.11 | temperature | 15 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 284 | 192.37 | temperature | 15 | 43200 | < th | dose dependent | sin | 8 | NA |
| 311 | 192.44 | temperature | 15 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 618 | 193.21 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 680 | 193.38 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 715 | 193.51 | temperature | 15 | 43200 | < th | dose dependent | rect. | 4 | 23 |
| 734 | 193.57 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 746 | 193.61 | temperature | 15 | 43200 | > th | dose independent | sin | 13 | NA |
| 756 | 193.63 | temperature | 15 | 43200 | < th | dose independent | sin | 12 | NA |
| 866 | 193.83 | temperature | 15 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 870 | 193.83 | temperature | 15 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 922 | 193.89 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 18 |
| 923 | 193.90 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 935 | 193.92 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 942 | 193.92 | temperature | 15 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 944 | 193.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 985 | 193.96 | temperature | 15 | 43200 | > th | dose independent | rect. | 23 | 16 |