Os03g0333400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0333400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.74 | 0.609 | 13.5 | -2.86 | 0.475 | 0.691 | -0.423 | -0.53 | -1.63 | 7.64 | 25.3 | 231 | -- | -- |
| 168.49 | 0.605 | 13.5 | -2.72 | 0.47 | 0.671 | -0.298 | -- | -1.58 | 7.55 | 25.3 | 222 | -- | -- |
| 168.22 | 0.604 | 13.5 | -2.84 | 0.472 | 0.686 | -- | -0.425 | -1.62 | 7.66 | 25.3 | 231 | -- | -- |
| 168.74 | 0.605 | 13.5 | -2.72 | 0.461 | 0.661 | -- | -- | -1.57 | 7.6 | 25.3 | 222 | -- | -- |
| 177.58 | 0.621 | 13.5 | -2.72 | -- | 0.531 | -- | -0.31 | -1.56 | -- | 25.4 | 168 | -- | -- |
| 190.14 | 0.646 | 13.5 | -2.52 | 0.356 | -- | -0.0903 | -- | -1.28 | 12.5 | -- | -- | -- | -- |
| 190.17 | 0.646 | 13.5 | -2.53 | 0.357 | -- | -- | -- | -1.28 | 12.6 | -- | -- | -- | -- |
| 177.63 | 0.621 | 13.5 | -2.75 | -- | 0.549 | -- | -- | -1.55 | -- | 23.7 | 252 | -- | -- |
| 355.86 | 0.883 | 13.4 | -- | 0.287 | 0.194 | -- | -- | -1.09 | 11.9 | 25.3 | 222 | -- | -- |
| 198.14 | 0.658 | 13.5 | -2.54 | -- | -- | -- | -- | -1.29 | -- | -- | -- | -- | -- |
| 358.51 | 0.886 | 13.4 | -- | 0.396 | -- | -- | -- | -1 | 12.9 | -- | -- | -- | -- |
| 360.23 | 0.887 | 13.4 | -- | -- | 0.285 | -- | -- | -1.14 | -- | 25.3 | 222 | -- | -- |
| 368.3 | 0.896 | 13.4 | -- | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.72 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 7 | 163.08 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 12 | 163.61 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 14 | 163.84 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 19 | 163.95 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 21 | 8 |
| 89 | 165.40 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 115 | 165.86 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 116 | 165.88 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 122 | 165.93 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 125 | 165.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 137 | 166.23 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 17 |
| 138 | 166.24 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 158 | 166.44 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 160 | 166.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 161 | 166.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 164 | 166.47 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 187 | 166.84 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 222 | 167.09 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 8 | 9 |
| 250 | 167.36 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 9 | 16 |
| 287 | 167.50 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 289 | 167.52 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 302 | 167.62 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 2 |
| 307 | 167.65 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 2 | 17 |
| 319 | 167.72 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 366 | 167.99 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 368 | 168.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 373 | 168.01 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 23 | 22 |
| 376 | 168.02 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 417 | 168.23 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 4 | 17 |
| 487 | 168.51 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 494 | 168.52 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 2 | 21 |
| 520 | 168.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 526 | 168.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 527 | 168.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 2 |
| 539 | 168.67 | atmosphere | 1000.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 545 | 168.68 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 562 | 168.71 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 564 | 168.72 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 571 | 168.75 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 584 | 168.79 | humidity | 80.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 603 | 168.82 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 618 | 168.85 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 619 | 168.85 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 622 | 168.86 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 635 | 168.89 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 640 | 168.90 | atmosphere | 1015.0 | 720 | < th | dose dependent | sin | 2 | NA |
| 686 | 169.00 | humidity | 80.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 692 | 169.02 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 701 | 169.04 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 842 | 169.39 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 898 | 169.49 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 909 | 169.53 | temperature | 15.0 | 30 | > th | dose dependent | no | NA | NA |
| 967 | 169.63 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 978 | 169.66 | atmosphere | 1015.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 992 | 169.68 | atmosphere | 1000.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 993 | 169.68 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 9 | 23 |