Os03g0333000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0333000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.13 | 0.216 | 10.7 | -0.112 | 1.13 | -1.08 | 0.00745 | 0.6 | -0.133 | 7.57 | 0.36 | 740 | -- | -- |
| 21.32 | 0.215 | 10.6 | -0.108 | 1.15 | -1.12 | 0.359 | -- | -0.121 | 7.57 | 0.1923 | 745 | -- | -- |
| 21.11 | 0.214 | 10.7 | -0.113 | 1.13 | -1.08 | -- | 0.613 | -0.132 | 7.64 | 0.36 | 748 | -- | -- |
| 21.54 | 0.216 | 10.6 | -0.108 | 1.18 | -1.18 | -- | -- | -0.131 | 7.9 | 0.1719 | 800 | -- | -- |
| 25.16 | 0.235 | 10.7 | -0.00429 | -- | -0.381 | -- | 0.0889 | -0.0938 | -- | 1.17 | 1583 | -- | -- |
| 24.14 | 0.23 | 10.7 | 0.0154 | 0.524 | -- | 0.0776 | -- | -0.0869 | 10.6 | -- | -- | -- | -- |
| 24.16 | 0.23 | 10.7 | 0.0186 | 0.524 | -- | -- | -- | -0.0867 | 10.6 | -- | -- | -- | -- |
| 25.19 | 0.235 | 10.7 | 0.000643 | -- | -0.382 | -- | -- | -0.0962 | -- | 1.787 | 1614 | -- | -- |
| 21.82 | 0.218 | 10.6 | -- | 1.18 | -1.17 | -- | -- | -0.126 | 7.89 | 0.36 | 799 | -- | -- |
| 41.01 | 0.299 | 10.7 | 0.00913 | -- | -- | -- | -- | -0.0891 | -- | -- | -- | -- | -- |
| 24.17 | 0.23 | 10.7 | -- | 0.523 | -- | -- | -- | -0.0888 | 10.6 | -- | -- | -- | -- |
| 25.19 | 0.235 | 10.7 | -- | -- | -0.382 | -- | -- | -0.0963 | -- | 1.787 | 1614 | -- | -- |
| 41.02 | 0.299 | 10.7 | -- | -- | -- | -- | -- | -0.0901 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.23 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 3 | 20.39 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 23 | 19 |
| 5 | 20.58 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 6 | 20.58 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 9 | 20.59 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 10 | 20.62 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 13 |
| 14 | 20.68 | radiation | 1.0 | 720 | < th | dose independent | rect. | 21 | 22 |
| 17 | 20.72 | radiation | 1.0 | 720 | < th | dose independent | rect. | 23 | 19 |
| 21 | 20.76 | radiation | 1.0 | 720 | < th | dose dependent | sin | 1 | NA |
| 33 | 20.87 | radiation | 1.0 | 720 | < th | dose independent | rect. | 1 | 17 |
| 34 | 20.87 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 39 | 20.92 | radiation | 1.0 | 720 | < th | dose independent | sin | 0 | NA |
| 40 | 20.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 24 | 14 |
| 49 | 20.95 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 53 | 20.96 | radiation | 1.0 | 720 | < th | dose independent | rect. | 6 | 21 |
| 61 | 20.98 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 76 | 21.03 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 77 | 21.03 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 3 | 11 |
| 82 | 21.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 88 | 21.05 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 1 | 13 |
| 91 | 21.06 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 104 | 21.08 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 114 | 21.10 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 159 | 21.17 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 205 | 21.20 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 3 |
| 208 | 21.21 | humidity | 80.0 | 720 | < th | dose independent | sin | 1 | NA |
| 214 | 21.21 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 20 |
| 225 | 21.22 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 244 | 21.23 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 269 | 21.24 | humidity | 80.0 | 720 | < th | dose independent | rect. | 19 | 21 |
| 273 | 21.24 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 278 | 21.25 | radiation | 1.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 282 | 21.25 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 287 | 21.25 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 3 |
| 307 | 21.26 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 312 | 21.26 | humidity | 80.0 | 720 | > th | dose independent | rect. | 7 | 20 |
| 332 | 21.27 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 333 | 21.27 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 357 | 21.27 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 405 | 21.29 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 442 | 21.30 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 448 | 21.30 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 494 | 21.32 | humidity | 80.0 | 720 | < th | dose independent | rect. | 24 | 21 |
| 496 | 21.32 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 23 |
| 503 | 21.32 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 522 | 21.33 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 523 | 21.33 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 525 | 21.33 | wind | 7.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 537 | 21.34 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 543 | 21.34 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 690 | 21.36 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 707 | 21.37 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 716 | 21.37 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 15 | 8 |
| 727 | 21.37 | humidity | 80.0 | 720 | > th | dose independent | rect. | 23 | 20 |
| 736 | 21.37 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 737 | 21.37 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 5 | 8 |
| 747 | 21.38 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 749 | 21.38 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 752 | 21.38 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 4 |
| 908 | 21.39 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 909 | 21.39 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 922 | 21.39 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 951 | 21.40 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 973 | 21.41 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 989 | 21.41 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 23 | 23 |