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Os03g0332900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.34 (0.0448) R2 : 0.412
β1 : -1.16 (0.165) R2dD : 0.0664 R2D : 0.0222
β2 : 1.3 (0.125) R2dC : 0.192 R2C : -0.131
β3 : -3.68 (0.217) R2dE : 0.519 R2E : 0.157
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0459 (0.0957) R2dN8 : 0.000342 R2N8 : -0.00449
σ : 0.832
deviance : 318.98
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C
peak time of C : 22.4
E
wheather : temperature
threshold : 30.95
memory length : 836
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.6
open length of G : 2.93

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.78 0.82 8.31 -0.755 1.22 -3.68 1.67 -3.47 0.0167 22.1 30.11 821 17.9 2.65
319.32 0.832 8.34 -1.12 1.18 -3.44 0.281 -- -0.0494 21.8 30.21 842 17.7 2.67
311.65 0.822 8.33 -0.903 1.21 -3.68 -- -2.15 -0.0167 22 30 824 17.9 2.78
318.98 0.832 8.34 -1.16 1.3 -3.68 -- -- -0.0459 22.4 30.95 836 17.6 2.93
354.09 0.876 8.31 -0.923 -- -3.04 -- -2.32 -0.0797 -- 30.44 948 17.8 3.6
449.2 0.994 8.28 -0.685 1.17 -- 1.1 -- 0.189 17.5 -- -- -- --
452.12 0.996 8.28 -0.688 1.17 -- -- -- 0.194 17.4 -- -- -- --
357.59 0.881 8.34 -1.08 -- -3.06 -- -- -0.142 -- 31.08 934 17.6 5.12
352 0.874 8.31 -- 1.26 -3.38 -- -- 0.12 22.1 31.19 833 17.7 2.77
523.7 1.07 8.26 -0.727 -- -- -- -- 0.165 -- -- -- -- --
464.58 1.01 8.26 -- 1.18 -- -- -- 0.27 17.3 -- -- -- --
390.72 0.921 8.28 -- -- -2.94 -- -- 0.00188 -- 33.36 969 16.1 7.33
537.66 1.08 8.24 -- -- -- -- -- 0.246 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 314.22 temperature 30 720 < th dose dependent rect. 18 3
8 320.52 temperature 15 720 > th dose dependent rect. 17 7
64 332.80 temperature 25 720 > th dose dependent rect. 19 2
73 333.70 temperature 25 10 < th dose dependent rect. 18 19
76 333.86 temperature 25 30 < th dose dependent rect. 5 23
94 334.57 temperature 25 90 < th dose dependent rect. 23 23
122 336.09 temperature 20 90 > th dose independent sin 4 NA
126 336.33 temperature 30 720 < th dose dependent sin 16 NA
129 336.40 temperature 25 10 < th dose dependent rect. 1 23
130 336.43 humidity 60 14400 < th dose independent rect. 17 3
145 336.85 temperature 20 720 > th dose dependent sin 15 NA
175 338.38 humidity 60 14400 < th dose dependent rect. 17 16
184 338.65 temperature 25 10 < th dose dependent rect. 16 22
201 339.16 temperature 25 10 < th dose dependent sin 6 NA
208 339.32 temperature 25 10 < th dose dependent rect. 11 23
212 339.40 temperature 25 720 > th dose dependent rect. 17 14
213 339.43 temperature 25 10 < th dose dependent no NA NA
245 339.92 temperature 25 10 < th dose dependent rect. 21 23
254 340.07 humidity 70 4320 < th dose dependent rect. 19 2
264 340.08 temperature 25 10 < th dose dependent rect. 23 23
268 340.17 wind 5 43200 > th dose dependent rect. 18 3
271 340.22 humidity 50 14400 < th dose dependent rect. 16 19
277 340.33 temperature 25 30 < th dose dependent rect. 9 23
278 340.35 temperature 25 10 < th dose dependent rect. 3 23
286 340.47 temperature 25 30 < th dose dependent rect. 7 23
300 340.91 temperature 20 90 < th dose independent sin 5 NA
308 341.22 humidity 50 14400 < th dose independent rect. 16 19
320 341.68 humidity 60 14400 < th dose dependent rect. 17 2
329 341.98 humidity 60 14400 < th dose dependent rect. 17 5
345 342.19 wind 5 43200 > th dose dependent rect. 15 15
354 342.50 wind 5 43200 > th dose dependent sin 15 NA
355 342.51 humidity 60 14400 > th dose independent rect. 17 3
358 342.61 wind 5 43200 > th dose independent sin 14 NA
359 342.61 humidity 60 14400 > th dose independent rect. 17 6
368 342.76 humidity 60 14400 > th dose independent rect. 17 10
382 342.96 wind 7 43200 < th dose independent rect. 18 3
383 342.96 humidity 60 14400 > th dose independent rect. 17 14
392 343.15 wind 5 43200 > th dose independent rect. 15 15
397 343.26 temperature 20 90 > th dose independent rect. 3 15
401 343.31 wind 5 43200 < th dose independent sin 14 NA
410 343.48 humidity 50 14400 > th dose independent rect. 17 17
414 343.57 wind 7 43200 > th dose independent rect. 18 3
415 343.57 humidity 70 720 > th dose independent rect. 18 9
417 343.60 wind 5 43200 < th dose independent rect. 16 14
421 343.61 wind 5 43200 > th dose dependent rect. 15 8
434 343.80 temperature 25 720 < th dose independent rect. 18 4
442 343.89 wind 5 43200 > th dose independent rect. 13 19
447 343.97 wind 5 43200 < th dose independent rect. 15 16
468 344.38 wind 5 43200 > th dose dependent rect. 15 11
491 344.67 wind 5 43200 < th dose independent rect. 13 20
518 344.98 humidity 70 4320 < th dose independent rect. 19 1
528 345.12 wind 5 43200 < th dose independent rect. 10 21
559 345.30 humidity 70 1440 < th dose independent rect. 18 14
656 346.20 wind 7 43200 < th dose independent rect. 15 7
742 346.91 wind 7 43200 > th dose independent rect. 15 7
755 346.99 wind 5 43200 < th dose independent rect. 22 23
758 347.03 wind 5 43200 > th dose independent rect. 23 22
778 347.19 wind 5 43200 < th dose independent rect. 2 23
788 347.25 wind 5 43200 > th dose independent rect. 2 23
789 347.27 wind 5 43200 < th dose independent no NA NA
820 347.41 wind 5 43200 > th dose independent no NA NA
844 347.53 wind 5 43200 > th dose independent rect. 2 20
856 347.59 temperature 25 720 > th dose independent rect. 18 4
969 348.11 wind 5 43200 < th dose independent rect. 17 8
975 348.15 temperature 25 720 > th dose independent rect. 17 6