Os03g0332000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome P450 family protein.
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Os03g0332000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome P450 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 258.31 | 0.755 | 6.35 | -2.71 | 1.27 | 2.4 | 0.627 | 0.0572 | -0.692 | 10.9 | 9.949 | 714 | 3.05 | 4.05 |
| 258.23 | 0.748 | 6.35 | -2.72 | 1.35 | 2.35 | 0.654 | -- | -0.698 | 10.9 | 10.76 | 711 | 3.1 | 4.06 |
| 258.56 | 0.749 | 6.34 | -2.62 | 1.3 | 2.38 | -- | 0.777 | -0.672 | 10.9 | 10.52 | 708 | 3.12 | 4.03 |
| 259.91 | 0.751 | 6.35 | -2.71 | 1.45 | 2.28 | -- | -- | -0.706 | 10.8 | 11.51 | 711 | 3.15 | 3.98 |
| 263.86 | 0.757 | 6.34 | -2.6 | -- | 3.37 | -- | 0.987 | -0.578 | -- | 2.511 | 700 | 3.1 | 4.18 |
| 312.84 | 0.829 | 6.23 | -2.49 | 3.4 | -- | 1.01 | -- | -0.395 | 10.8 | -- | -- | -- | -- |
| 317.11 | 0.834 | 6.23 | -2.44 | 3.39 | -- | -- | -- | -0.392 | 10.8 | -- | -- | -- | -- |
| 263.46 | 0.756 | 6.37 | -2.69 | -- | 3.56 | -- | -- | -0.666 | -- | 4.755 | 709 | 2.88 | 4.48 |
| 444.58 | 0.982 | 6.28 | -- | 2.11 | 1.55 | -- | -- | -0.366 | 10.9 | 11.53 | 688 | 3.68 | 3.35 |
| 1030.31 | 1.5 | 6.32 | -2.52 | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
| 474.66 | 1.02 | 6.17 | -- | 3.41 | -- | -- | -- | -0.12 | 10.9 | -- | -- | -- | -- |
| 448.59 | 0.986 | 6.29 | -- | -- | 3.4 | -- | -- | -0.311 | -- | -1.312 | 693 | 2.93 | 4.65 |
| 1197.23 | 1.62 | 6.26 | -- | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 258.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 4 | 261.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 12 |
| 24 | 268.00 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 26 | 268.25 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 13 |
| 39 | 269.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 71 | 270.61 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 87 | 271.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 7 |
| 99 | 271.75 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 11 |
| 101 | 271.80 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 103 | 271.87 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 177 | 273.45 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 200 | 273.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 313 | 275.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 382 | 276.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 402 | 277.05 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 452 | 277.61 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 457 | 277.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 478 | 277.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 493 | 277.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 521 | 278.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 547 | 278.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 552 | 278.59 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 570 | 278.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 628 | 279.09 | temperature | 30 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 635 | 279.13 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 8 | 15 |
| 675 | 279.49 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 7 |
| 728 | 279.75 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 759 | 279.93 | wind | 9 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 760 | 279.93 | wind | 9 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 786 | 280.08 | temperature | 25 | 10 | < th | dose independent | sin | 1 | NA |
| 801 | 280.19 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 808 | 280.24 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 9 |
| 825 | 280.33 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 8 | 13 |
| 867 | 280.54 | wind | 9 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 894 | 280.64 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 17 |
| 897 | 280.66 | wind | 9 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 903 | 280.69 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 952 | 280.88 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 956 | 280.90 | wind | 9 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 961 | 280.92 | temperature | 25 | 10 | < th | dose independent | rect. | 4 | 15 |