Os03g0331700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Avr9/Cf-9 rapidly elicited protein 31.
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Os03g0331700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Avr9/Cf-9 rapidly elicited protein 31.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.64 | 0.579 | 10.8 | -0.211 | 2.44 | -1.21 | -0.98 | -1.37 | 0.0356 | 8.1 | 23.3 | 709 | -- | -- |
| 152.47 | 0.575 | 10.7 | 0.0412 | 2.45 | -1.29 | -0.697 | -- | 0.0825 | 8.03 | 23.59 | 754 | -- | -- |
| 154.15 | 0.578 | 10.7 | -0.184 | 2.45 | -1.22 | -- | -0.858 | 0.0614 | 8.13 | 23.04 | 707 | -- | -- |
| 153.95 | 0.578 | 10.7 | 0.0218 | 2.45 | -1.28 | -- | -- | 0.104 | 8.06 | 23.29 | 737 | -- | -- |
| 365.18 | 0.89 | 10.7 | 0.955 | -- | -3.46 | -- | 3.53 | 0.442 | -- | 24.24 | 633 | -- | -- |
| 188.51 | 0.644 | 10.8 | -0.275 | 2.91 | -- | -0.347 | -- | -0.0745 | 8.09 | -- | -- | -- | -- |
| 188.87 | 0.644 | 10.8 | -0.285 | 2.91 | -- | -- | -- | -0.0742 | 8.09 | -- | -- | -- | -- |
| 372.88 | 0.899 | 10.8 | 0.376 | -- | -3.13 | -- | -- | 0.27 | -- | 24.3 | 633 | -- | -- |
| 153.97 | 0.578 | 10.7 | -- | 2.45 | -1.27 | -- | -- | 0.106 | 8.06 | 23.24 | 736 | -- | -- |
| 652.02 | 1.19 | 10.8 | -0.259 | -- | -- | -- | -- | -0.0387 | -- | -- | -- | -- | -- |
| 191.01 | 0.646 | 10.7 | -- | 2.9 | -- | -- | -- | -0.0425 | 8.1 | -- | -- | -- | -- |
| 376.37 | 0.904 | 10.8 | -- | -- | -3.07 | -- | -- | 0.212 | -- | 24.4 | 629 | -- | -- |
| 653.78 | 1.19 | 10.8 | -- | -- | -- | -- | -- | -0.00997 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 12 | 143.63 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 17 |
| 16 | 144.31 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 4 |
| 31 | 145.73 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 6 |
| 43 | 146.55 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 51 | 147.07 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 14 |
| 71 | 148.19 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 86 | 148.66 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 89 | 148.68 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 10 |
| 92 | 148.82 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 97 | 148.90 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 4 |
| 128 | 149.48 | radiation | 10 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 133 | 149.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 161 | 149.88 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 13 |
| 164 | 149.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 173 | 150.18 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 183 | 150.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 197 | 150.35 | temperature | 30 | 720 | > th | dose dependent | sin | 12 | NA |
| 198 | 150.35 | temperature | 20 | 720 | > th | dose dependent | sin | 21 | NA |
| 245 | 150.66 | temperature | 25 | 90 | > th | dose dependent | sin | 12 | NA |
| 281 | 150.85 | radiation | 10 | 270 | > th | dose independent | rect. | 16 | 15 |
| 366 | 151.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 367 | 151.60 | radiation | 20 | 270 | < th | dose dependent | sin | 13 | NA |
| 438 | 152.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 13 |
| 479 | 152.10 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 540 | 152.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 558 | 152.32 | temperature | 30 | 720 | > th | dose independent | sin | 12 | NA |
| 563 | 152.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 588 | 152.51 | temperature | 30 | 720 | < th | dose independent | sin | 12 | NA |
| 647 | 152.74 | radiation | 10 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 777 | 153.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 783 | 153.18 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 10 |
| 795 | 153.21 | humidity | 70 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 838 | 153.30 | humidity | 50 | 270 | > th | dose independent | rect. | 16 | 23 |
| 864 | 153.41 | radiation | 20 | 270 | > th | dose independent | rect. | 16 | 1 |
| 879 | 153.42 | humidity | 70 | 720 | < th | dose dependent | sin | 12 | NA |
| 881 | 153.43 | humidity | 70 | 270 | > th | dose independent | sin | 13 | NA |
| 945 | 153.68 | humidity | 60 | 720 | < th | dose independent | sin | 12 | NA |
| 955 | 153.74 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 4 |
| 983 | 153.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 9 |
| 994 | 153.82 | humidity | 70 | 720 | < th | dose dependent | rect. | 15 | 4 |