Os03g0329700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0329700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.13 | 0.475 | 10.8 | -1.04 | 0.395 | 1.41 | 0.286 | -1.89 | -0.00616 | 14.5 | 22.24 | 6304 | -- | -- |
| 101.67 | 0.47 | 10.8 | -0.92 | 0.443 | 1.78 | 0.0843 | -- | -0.123 | 14.8 | 16.91 | 11394 | -- | -- |
| 102.38 | 0.471 | 10.8 | -1.06 | 0.408 | 1.41 | -- | -2.03 | -0.00546 | 14.6 | 22.55 | 6338 | -- | -- |
| 101.46 | 0.469 | 10.8 | -0.968 | 0.453 | 1.75 | -- | -- | -0.132 | 15.1 | 17.44 | 11355 | -- | -- |
| 108.8 | 0.486 | 10.8 | -1.13 | -- | 1.36 | -- | -2.83 | 0.115 | -- | 25.8 | 6221 | -- | -- |
| 165.2 | 0.603 | 10.7 | 0.172 | 0.387 | -- | 0.0719 | -- | 0.516 | 15.4 | -- | -- | -- | -- |
| 165.22 | 0.602 | 10.7 | 0.173 | 0.388 | -- | -- | -- | 0.516 | 15.4 | -- | -- | -- | -- |
| 112.24 | 0.493 | 10.8 | -0.974 | -- | 1.71 | -- | -- | -0.167 | -- | 17.78 | 11843 | -- | -- |
| 109.11 | 0.486 | 10.7 | -- | 0.37 | 1.19 | -- | -- | 0.273 | 15 | 22.66 | 6272 | -- | -- |
| 173.69 | 0.616 | 10.7 | 0.157 | -- | -- | -- | -- | 0.506 | -- | -- | -- | -- | -- |
| 166 | 0.603 | 10.7 | -- | 0.385 | -- | -- | -- | 0.497 | 15.4 | -- | -- | -- | -- |
| 116.34 | 0.502 | 10.7 | -- | -- | 1.12 | -- | -- | 0.38 | -- | 26.1 | 6259 | -- | -- |
| 174.34 | 0.616 | 10.7 | -- | -- | -- | -- | -- | 0.488 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.27 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 93.59 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 12 | 94.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 14 | 94.85 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 15 | 94.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 16 | 94.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 20 | 94.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 23 | 99.02 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 24 | 99.06 | radiation | 20 | 14400 | < th | dose dependent | rect. | 18 | 10 |
| 29 | 99.16 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 30 | 99.17 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 38 | 99.27 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 39 | 99.29 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 91 | 100.81 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 165 | 101.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 198 | 102.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 15 |
| 210 | 102.17 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 211 | 102.17 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 229 | 102.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 22 |
| 240 | 102.30 | radiation | 1 | 14400 | < th | dose dependent | sin | 17 | NA |
| 242 | 102.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 12 |
| 243 | 102.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 14 |
| 244 | 102.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 7 | 16 |
| 249 | 102.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 309 | 102.52 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 311 | 102.55 | wind | 3 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 323 | 102.65 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 352 | 102.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 392 | 102.91 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 22 |
| 399 | 102.96 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 402 | 102.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 414 | 103.02 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 419 | 103.06 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 421 | 103.07 | temperature | 20 | 4320 | > th | dose dependent | sin | 2 | NA |
| 435 | 103.13 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 448 | 103.17 | radiation | 1 | 14400 | > th | dose independent | sin | 14 | NA |
| 456 | 103.21 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 461 | 103.23 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 23 |
| 466 | 103.25 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 21 |
| 471 | 103.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 12 |
| 476 | 103.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 19 |
| 504 | 103.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 19 |
| 508 | 103.39 | humidity | 80 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 519 | 103.42 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 18 |
| 528 | 103.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 607 | 103.70 | radiation | 1 | 14400 | < th | dose independent | sin | 14 | NA |
| 626 | 103.73 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 20 |
| 630 | 103.74 | humidity | 90 | 43200 | > th | dose independent | rect. | 15 | 8 |
| 638 | 103.76 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 653 | 103.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 18 |
| 659 | 103.78 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 669 | 103.78 | radiation | 1 | 14400 | > th | dose independent | rect. | 13 | 16 |
| 689 | 103.80 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 8 |
| 713 | 103.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 14 | 22 |
| 714 | 103.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 743 | 103.86 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 21 |
| 749 | 103.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 16 |
| 755 | 103.87 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 20 |
| 790 | 103.89 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 863 | 103.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 919 | 104.07 | radiation | 1 | 14400 | > th | dose independent | rect. | 11 | 21 |
| 926 | 104.09 | temperature | 10 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 935 | 104.11 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 20 |
| 937 | 104.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 941 | 104.13 | temperature | 30 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 956 | 104.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 10 |
| 957 | 104.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 12 |
| 959 | 104.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 17 |
| 980 | 104.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 18 |
| 1000 | 104.23 | radiation | 1 | 14400 | < th | dose independent | rect. | 11 | 21 |