Os03g0325400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os03g0325400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.81 | 0.409 | 8.97 | -0.979 | 0.566 | -0.643 | 0.288 | -0.792 | -0.0312 | 19.2 | 68.29 | 1215 | -- | -- |
| 77.02 | 0.409 | 8.96 | -0.9 | 0.563 | -0.688 | 0.243 | -- | -0.0162 | 19.1 | 69 | 1215 | -- | -- |
| 76.02 | 0.406 | 8.97 | -0.98 | 0.567 | -0.648 | -- | -0.763 | -0.0301 | 19.3 | 68.17 | 1215 | -- | -- |
| 77.13 | 0.409 | 8.95 | -0.89 | 0.566 | -0.696 | -- | -- | -0.0102 | 19.3 | 68.99 | 1213 | -- | -- |
| 92.25 | 0.447 | 8.95 | -0.994 | -- | -0.634 | -- | -0.742 | -0.0417 | -- | 68 | 1261 | -- | -- |
| 94.24 | 0.455 | 8.95 | -1.03 | 0.568 | -- | 0.503 | -- | -0.012 | 17.9 | -- | -- | -- | -- |
| 94.81 | 0.456 | 8.95 | -1.04 | 0.572 | -- | -- | -- | -0.0104 | 18.1 | -- | -- | -- | -- |
| 93.36 | 0.45 | 8.95 | -0.897 | -- | -0.685 | -- | -- | -0.0212 | -- | 68.53 | 1261 | -- | -- |
| 97.84 | 0.461 | 8.95 | -- | 0.575 | -0.753 | -- | -- | 0.0575 | 19.3 | 68.99 | 1213 | -- | -- |
| 111.78 | 0.494 | 8.94 | -1.05 | -- | -- | -- | -- | -0.0232 | -- | -- | -- | -- | -- |
| 123.17 | 0.519 | 8.92 | -- | 0.587 | -- | -- | -- | 0.105 | 18 | -- | -- | -- | -- |
| 114.4 | 0.498 | 8.93 | -- | -- | -0.786 | -- | -- | 0.0972 | -- | 68 | 1261 | -- | -- |
| 141.06 | 0.554 | 8.91 | -- | -- | -- | -- | -- | 0.0937 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.45 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 9 | 70.85 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 10 | 71.03 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 13 | 71.33 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 14 | 71.41 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 16 | 71.60 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 18 | 71.87 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 22 | 72.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 32 | 72.51 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 44 | 72.87 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 72 | 73.52 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 76 | 73.62 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 6 |
| 78 | 73.65 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 105 | 74.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 145 | 74.73 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 148 | 74.80 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 178 | 75.17 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 212 | 75.37 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 226 | 75.48 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 256 | 75.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 292 | 76.12 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 323 | 76.28 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 324 | 76.28 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 325 | 76.29 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 344 | 76.42 | wind | 7.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 347 | 76.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 355 | 76.50 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 369 | 76.57 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 378 | 76.64 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 382 | 76.64 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 20 |
| 386 | 76.65 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 392 | 76.68 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 404 | 76.72 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 407 | 76.75 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 410 | 76.76 | wind | 9.0 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 426 | 76.80 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 431 | 76.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 441 | 76.86 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 445 | 76.86 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 20 |
| 451 | 76.88 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 496 | 76.93 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 529 | 77.00 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 548 | 77.03 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 550 | 77.03 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 17 |
| 561 | 77.05 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 576 | 77.07 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 600 | 77.12 | wind | 9.0 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 663 | 77.25 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 13 |
| 668 | 77.27 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 680 | 77.29 | humidity | 60.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 687 | 77.30 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 705 | 77.33 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 708 | 77.33 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 709 | 77.33 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 710 | 77.33 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 712 | 77.33 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 729 | 77.36 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 736 | 77.38 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 775 | 77.48 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 777 | 77.48 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 4 | NA |
| 778 | 77.48 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 785 | 77.49 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 810 | 77.53 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 823 | 77.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 827 | 77.56 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 829 | 77.56 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 845 | 77.59 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 866 | 77.63 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 6 |
| 870 | 77.63 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 18 |
| 871 | 77.63 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 874 | 77.63 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 879 | 77.65 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 909 | 77.72 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 926 | 77.73 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 22 | 15 |
| 927 | 77.73 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 930 | 77.74 | wind | 9.0 | 43200 | < th | dose independent | rect. | 4 | 9 |