Os03g0325000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pyruvate kinase family protein.
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Os03g0325000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pyruvate kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.95 | 0.283 | -777 | 4770 | 0.112 | -196000 | -0.0569 | 1200000 | 0.0186 | 8.21 | 995 | 90 | -- | -- |
| 40.67 | 0.299 | 2.97 | -0.0364 | 0.0988 | 0.892 | -0.0835 | -- | 0.0147 | 8.47 | 995 | 90 | -- | -- |
| 36.96 | 0.283 | -777 | 4770 | 0.112 | -196000 | -- | 1200000 | 0.0185 | 8.34 | 995 | 90 | -- | -- |
| 34.15 | 0.272 | 2.97 | -0.045 | 0.105 | 2.72 | -- | -- | 0.0165 | 8.51 | 994.7 | 156 | -- | -- |
| 37.65 | 0.286 | -777 | 4770 | -- | -196000 | -- | 1200000 | 0.0197 | -- | 995 | 90 | -- | -- |
| 41.54 | 0.302 | 2.97 | -0.0297 | 0.0933 | -- | -0.0837 | -- | 0.0123 | 8.76 | -- | -- | -- | -- |
| 41.56 | 0.302 | 2.97 | -0.032 | 0.0931 | -- | -- | -- | 0.0126 | 9.18 | -- | -- | -- | -- |
| 34.9 | 0.275 | 2.97 | -0.0478 | -- | 2.67 | -- | -- | 0.0198 | -- | 994.7 | 152 | -- | -- |
| 34.22 | 0.272 | 2.97 | -- | 0.105 | 2.71 | -- | -- | 0.0165 | 8.54 | 994.7 | 154 | -- | -- |
| 42.06 | 0.303 | 2.97 | -0.0323 | -- | -- | -- | -- | 0.0131 | -- | -- | -- | -- | -- |
| 41.58 | 0.302 | 2.97 | -- | 0.0931 | -- | -- | -- | 0.0161 | 9.2 | -- | -- | -- | -- |
| 34.96 | 0.275 | 2.97 | -- | -- | 2.67 | -- | -- | 0.0248 | -- | 994.7 | 152 | -- | -- |
| 42.09 | 0.303 | 2.97 | -- | -- | -- | -- | -- | 0.0166 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.09 | atmosphere | 995 | 90 | > th | dose independent | sin | 9 | NA |
| 6 | 34.21 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 1 |
| 13 | 34.21 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 24 | 34.32 | temperature | 30 | 10 | > th | dose independent | rect. | 17 | 1 |
| 41 | 34.37 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 1 |
| 126 | 34.59 | atmosphere | 995 | 30 | < th | dose independent | sin | 8 | NA |
| 169 | 34.59 | atmosphere | 995 | 30 | < th | dose dependent | sin | 8 | NA |
| 460 | 34.67 | temperature | 30 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 525 | 34.90 | radiation | 10 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 549 | 35.17 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 1 |
| 748 | 36.63 | atmosphere | 995 | 270 | > th | dose independent | sin | 3 | NA |
| 753 | 36.67 | temperature | 30 | 10 | > th | dose independent | sin | 11 | NA |
| 784 | 36.75 | humidity | 70 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 876 | 37.13 | atmosphere | 995 | 270 | < th | dose independent | sin | 4 | NA |
| 877 | 37.13 | wind | 7 | 90 | > th | dose dependent | rect. | 16 | 1 |
| 879 | 37.15 | atmosphere | 995 | 270 | < th | dose dependent | sin | 5 | NA |
| 885 | 37.18 | wind | 5 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 919 | 37.28 | temperature | 30 | 270 | > th | dose dependent | sin | 12 | NA |
| 926 | 37.31 | atmosphere | 995 | 90 | < th | dose dependent | no | NA | NA |