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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0324700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Exostosin-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.37 (0.0374) R2 : 0.383
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.38 (0.292) R2dC : 0.323 R2C : -0.873
β3 : 2.96 (0.313) R2dE : 1.26 R2E : 0.0579
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0899 (0.0788) R2dN8 : 0.00119 R2N8 : -0.00167
σ : 0.703
deviance : 227.61
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_____
C
peak time of C : 13.7
E
wheather : radiation
threshold : 4.385
memory length : 796
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.7
open length of G : 5.47

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.48 0.702 6.36 -0.388 1.33 2.89 2.87 2.42 -0.0772 13.5 3.96 799 15.9 5.16
224.15 0.697 6.37 -0.296 1.37 2.95 0.556 -- -0.106 13.6 4.38 795 15.7 5.49
225.95 0.7 6.35 -0.361 1.34 2.84 -- -0.366 -0.0602 13.6 4.387 795 15.9 5.32
225.6 0.7 6.37 -0.266 1.37 2.95 -- -- -0.0934 13.6 4.383 796 15.7 5.47
258.44 0.749 6.36 -0.285 -- 1.92 -- 0.54 0.0195 -- 23.65 2371 15 6.11
275.19 0.778 6.37 -0.231 1.24 -- -0.406 -- -0.0542 1.94 -- -- -- --
275.82 0.778 6.37 -0.219 1.24 -- -- -- -0.0518 1.95 -- -- -- --
255.5 0.744 6.35 -0.186 -- 1.82 -- -- 0.061 -- 20.06 2359 15.1 6.07
227.61 0.703 6.37 -- 1.38 2.96 -- -- -0.0899 13.7 4.385 796 15.7 5.47
367.99 0.896 6.36 -0.167 -- -- -- -- -0.0231 -- -- -- -- --
277.08 0.779 6.37 -- 1.23 -- -- -- -0.0275 1.94 -- -- -- --
256.63 0.746 6.35 -- -- 1.77 -- -- 0.0604 -- 20.03 2360 15 6.08
368.73 0.896 6.35 -- -- -- -- -- -0.00454 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.65 radiation 10.0 720 < th dose dependent rect. 16 7
5 236.09 radiation 1.0 720 > th dose independent sin 13 NA
9 236.24 humidity 60.0 270 > th dose dependent rect. 17 4
11 236.70 radiation 1.0 720 < th dose dependent sin 22 NA
12 236.75 radiation 1.0 720 < th dose independent sin 13 NA
13 236.94 radiation 1.0 720 < th dose independent rect. 16 5
19 237.60 radiation 1.0 720 < th dose dependent rect. 6 15
22 237.88 radiation 1.0 720 < th dose independent rect. 7 14
24 238.01 radiation 1.0 720 > th dose independent rect. 15 18
27 238.25 radiation 10.0 720 < th dose dependent rect. 16 14
32 238.60 radiation 1.0 720 > th dose independent rect. 15 15
40 238.94 radiation 1.0 720 > th dose independent rect. 14 5
53 239.03 radiation 1.0 720 < th dose independent rect. 16 13
55 239.08 radiation 1.0 720 < th dose independent rect. 16 15
56 239.11 radiation 1.0 720 < th dose independent sin 22 NA
64 239.37 radiation 1.0 720 < th dose dependent sin 13 NA
69 239.41 radiation 1.0 720 < th dose independent rect. 15 18
107 239.85 radiation 10.0 720 < th dose dependent sin 15 NA
111 239.87 radiation 1.0 720 < th dose dependent rect. 10 11
141 240.26 radiation 1.0 720 < th dose independent rect. 3 18
163 240.74 radiation 1.0 720 < th dose dependent rect. 3 15
184 241.06 temperature 10.0 90 > th dose dependent rect. 23 20
203 241.48 radiation 1.0 720 > th dose independent rect. 13 22
204 241.50 radiation 1.0 720 < th dose independent rect. 6 23
227 241.76 radiation 1.0 1440 < th dose dependent rect. 14 4
229 241.79 radiation 1.0 720 > th dose dependent rect. 16 13
231 241.80 radiation 1.0 720 > th dose dependent rect. 16 3
244 241.93 humidity 50.0 270 > th dose dependent rect. 17 16
246 241.96 radiation 1.0 720 > th dose independent rect. 6 23
249 242.03 radiation 1.0 720 > th dose dependent rect. 16 1
251 242.06 radiation 1.0 720 > th dose independent rect. 6 13
282 242.27 radiation 1.0 1440 < th dose dependent rect. 17 1
293 242.40 temperature 10.0 10 > th dose dependent rect. 23 21
310 242.54 humidity 70.0 270 > th dose independent rect. 17 4
362 242.72 radiation 1.0 1440 < th dose dependent rect. 8 10
411 242.85 radiation 1.0 720 < th dose independent rect. 1 22
455 243.02 humidity 90.0 720 < th dose dependent rect. 15 3
463 243.07 radiation 1.0 720 < th dose independent rect. 10 23
464 243.08 temperature 30.0 270 < th dose independent rect. 17 14
502 243.17 radiation 1.0 1440 > th dose independent rect. 8 21
516 243.22 radiation 1.0 1440 > th dose independent rect. 8 11
551 243.30 radiation 1.0 720 > th dose independent no NA NA
552 243.30 radiation 1.0 720 > th dose independent rect. 4 15
607 243.34 radiation 1.0 720 < th dose independent no NA NA
729 243.58 radiation 1.0 720 < th dose dependent rect. 10 22
788 243.81 temperature 30.0 270 < th dose independent rect. 16 5
799 243.93 precipitation 0.1 720 < th dose independent rect. 15 18
801 243.93 precipitation 0.1 720 < th dose dependent rect. 15 18
809 243.97 radiation 1.0 720 < th dose dependent rect. 1 22
811 244.05 humidity 70.0 270 > th dose independent rect. 17 14
816 244.09 radiation 1.0 720 < th dose dependent no NA NA
827 244.16 humidity 90.0 720 < th dose dependent rect. 16 1
838 244.25 temperature 30.0 90 < th dose dependent rect. 4 19
879 244.46 radiation 1.0 720 < th dose dependent rect. 6 23
904 244.61 humidity 50.0 720 > th dose dependent rect. 10 20
919 244.71 precipitation 0.1 720 < th dose independent rect. 21 22
921 244.71 precipitation 0.1 720 < th dose dependent rect. 21 22
995 245.20 humidity 90.0 720 < th dose dependent rect. 14 12