Os03g0324600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os03g0324600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.15 | 0.542 | 8.08 | 1.64 | 0.993 | 1.34 | 0.916 | -0.964 | 0.418 | 21.9 | 80 | 1440 | -- | -- |
| 133.91 | 0.539 | 8.08 | 1.59 | 0.994 | 1.31 | 0.913 | -- | 0.412 | 21.9 | 81 | 1422 | -- | -- |
| 136.2 | 0.544 | 8.08 | 1.6 | 0.995 | 1.31 | -- | -0.816 | 0.416 | 22.1 | 80.33 | 1416 | -- | -- |
| 136.77 | 0.545 | 8.09 | 1.54 | 1 | 1.26 | -- | -- | 0.4 | 22.1 | 80.99 | 1416 | -- | -- |
| 193.86 | 0.648 | 8.06 | 1.63 | -- | 1.46 | -- | -1.02 | 0.415 | -- | 80.63 | 1490 | -- | -- |
| 153.88 | 0.582 | 8.1 | 1.54 | 1.02 | -- | 0.833 | -- | 0.327 | 21.8 | -- | -- | -- | -- |
| 156.5 | 0.586 | 8.11 | 1.51 | 1.02 | -- | -- | -- | 0.324 | 21.9 | -- | -- | -- | -- |
| 194.72 | 0.65 | 8.06 | 1.54 | -- | 1.42 | -- | -- | 0.402 | -- | 80.82 | 1510 | -- | -- |
| 192.89 | 0.647 | 8.08 | -- | 1.03 | 1.25 | -- | -- | 0.359 | 21.5 | 87.02 | 1683 | -- | -- |
| 218.73 | 0.691 | 8.08 | 1.52 | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
| 216.67 | 0.689 | 8.14 | -- | 1.02 | -- | -- | -- | 0.156 | 22 | -- | -- | -- | -- |
| 252.85 | 0.741 | 8.1 | -- | -- | 1.44 | -- | -- | 0.246 | -- | 83 | 1552 | -- | -- |
| 279.89 | 0.781 | 8.12 | -- | -- | -- | -- | -- | 0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.42 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 2 | 128.49 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 3 | 128.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 6 | 129.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 7 | 129.22 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 8 | 129.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 10 | 129.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 13 | 129.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 29 | 129.85 | humidity | 80 | 1440 | > th | dose independent | sin | 22 | NA |
| 40 | 130.00 | humidity | 80 | 1440 | < th | dose independent | sin | 23 | NA |
| 48 | 130.07 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 50 | 130.09 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 9 |
| 59 | 130.25 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 92 | 130.59 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 10 |
| 99 | 130.65 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 137 | 130.94 | humidity | 60 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 185 | 131.29 | humidity | 70 | 1440 | > th | dose dependent | sin | 20 | NA |
| 217 | 131.46 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 227 | 131.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 231 | 131.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 249 | 131.58 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 256 | 131.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 260 | 131.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 261 | 131.61 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 268 | 131.64 | radiation | 1 | 1440 | < th | dose independent | sin | 17 | NA |
| 287 | 131.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 20 |
| 332 | 131.76 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 5 |
| 339 | 131.78 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 378 | 131.87 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 387 | 131.89 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 414 | 131.94 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 435 | 131.98 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 472 | 132.06 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 491 | 132.08 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 15 |
| 517 | 132.12 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 559 | 132.18 | radiation | 1 | 1440 | > th | dose independent | sin | 17 | NA |
| 611 | 132.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 612 | 132.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 626 | 132.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 645 | 132.25 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 8 |
| 686 | 132.31 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 695 | 132.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 774 | 132.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 809 | 132.50 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 884 | 132.61 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 1 |