Os03g0323700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0323700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 710.49 | 1.25 | 5.75 | 4.06 | 0.387 | -5.28 | -1.3 | -5.11 | 0.995 | 6.93 | 1.349 | 1442 | -- | -- |
| 726.83 | 1.26 | 5.66 | 4.65 | 0.383 | -4.95 | -1.64 | -- | 1.22 | 7.37 | 1.601 | 1445 | -- | -- |
| 714.47 | 1.24 | 5.75 | 4.03 | 0.409 | -5.33 | -- | -5.21 | 0.998 | 7.74 | 1.347 | 1446 | -- | -- |
| 731.92 | 1.26 | 5.67 | 4.61 | 0.388 | -4.81 | -- | -- | 1.2 | 7.66 | 1.605 | 1445 | -- | -- |
| 722.45 | 1.25 | 5.76 | 4.03 | -- | -5.24 | -- | -5.2 | 0.996 | -- | 1.347 | 1440 | -- | -- |
| 1078.57 | 1.54 | 5.84 | 3.85 | 0.26 | -- | -1.6 | -- | 0.476 | 6.09 | -- | -- | -- | -- |
| 1084.34 | 1.54 | 5.83 | 3.84 | 0.268 | -- | -- | -- | 0.483 | 7.43 | -- | -- | -- | -- |
| 738.97 | 1.27 | 5.68 | 4.61 | -- | -4.72 | -- | -- | 1.2 | -- | 1.601 | 1437 | -- | -- |
| 1291.79 | 1.67 | 5.65 | -- | 0.582 | -3.96 | -- | -- | 1.13 | 7.5 | 1.765 | 1458 | -- | -- |
| 1088.16 | 1.54 | 5.84 | 3.84 | -- | -- | -- | -- | 0.487 | -- | -- | -- | -- | -- |
| 1472.81 | 1.8 | 5.93 | -- | 0.31 | -- | -- | -- | 0.0555 | 6.59 | -- | -- | -- | -- |
| 1272.41 | 1.66 | 5.65 | -- | -- | -3.8 | -- | -- | 1.14 | -- | 2.141 | 2856 | -- | -- |
| 1477.82 | 1.79 | 5.93 | -- | -- | -- | -- | -- | 0.061 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 705.84 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 2 | 706.90 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 3 | 707.47 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 4 | 707.47 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 15 | 710.93 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 16 | 711.11 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 17 | 712.18 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 37 | 715.70 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 39 | 718.26 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 45 | 720.12 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 48 | 720.71 | humidity | 60 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 49 | 720.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 51 | 721.07 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 52 | 721.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 59 | 721.77 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 67 | 722.49 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 15 |
| 81 | 723.33 | humidity | 50 | 1440 | > th | dose dependent | sin | 18 | NA |
| 85 | 723.44 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 8 |
| 86 | 723.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 10 |
| 119 | 724.07 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 141 | 724.50 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 190 | 725.44 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 219 | 725.78 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 21 |
| 325 | 726.64 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 331 | 726.66 | temperature | 25 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 361 | 726.80 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 366 | 726.86 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 388 | 727.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 441 | 727.53 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 505 | 727.72 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 522 | 727.97 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 527 | 728.05 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 528 | 728.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 568 | 728.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 569 | 728.65 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 573 | 728.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 577 | 728.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 582 | 728.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 606 | 729.23 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 621 | 729.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 631 | 729.45 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 639 | 729.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 648 | 729.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 652 | 729.62 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 667 | 729.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 673 | 729.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 678 | 729.83 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 681 | 729.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 689 | 729.89 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 722 | 730.19 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 726 | 730.29 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 730 | 730.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 17 |
| 752 | 730.55 | temperature | 25 | 14400 | > th | dose independent | sin | 13 | NA |
| 781 | 730.94 | temperature | 25 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 802 | 731.21 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 808 | 731.25 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 823 | 731.37 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 824 | 731.38 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 20 |
| 906 | 732.17 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 914 | 732.26 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 915 | 732.27 | humidity | 90 | 1440 | < th | dose dependent | sin | 17 | NA |
| 938 | 732.50 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 939 | 732.50 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 959 | 732.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 973 | 732.80 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 21 |
| 983 | 732.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |