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Os03g0323600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0495) R2 : 0.531
β1 : 1.58 (0.181) R2dD : 0.0809 R2D : 0.04
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.94 (0.147) R2dE : 0.415 R2E : 0.417
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.672 (0.106) R2dN8 : 0.0555 R2N8 : 0.0414
σ : 0.926
deviance : 394.9
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C
peak time of C : --
E
wheather : humidity
threshold : 51
memory length : 939
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.1
open length of G : 4.89

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
376.29 0.911 11.7 1.27 0.833 3.43 4.42 4.28 0.63 14.6 48.87 861 16.4 3.97
390.25 0.92 11.8 1.49 0.726 3.39 1.2 -- 0.62 15.5 50.21 892 16.1 4.28
405.72 0.938 11.6 1.66 0.756 3.37 -- 1.93 0.869 14.6 46.57 893 16.1 4.12
390.39 0.92 11.7 1.58 0.622 3.4 -- -- 0.642 14.6 48 917 15.6 4.55
393.48 0.924 11.8 1.51 -- 2.88 -- 0.903 0.647 -- 51 939 15.4 4.57
580.69 1.13 11.7 1.5 1.61 -- -0.346 -- 0.799 1.04 -- -- -- --
581.17 1.13 11.7 1.51 1.61 -- -- -- 0.801 0.996 -- -- -- --
394.9 0.926 11.7 1.58 -- 2.94 -- -- 0.672 -- 51 939 15.1 4.89
456.18 0.995 11.8 -- 0.628 3.45 -- -- 0.489 14.5 49.45 902 15.7 4.67
741.67 1.27 11.7 1.57 -- -- -- -- 0.832 -- -- -- -- --
641.13 1.18 11.8 -- 1.63 -- -- -- 0.633 1.04 -- -- -- --
460.7 1 11.8 -- -- 2.98 -- -- 0.476 -- 52.34 934 15.2 4.8
806.58 1.33 11.7 -- -- -- -- -- 0.658 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 406.94 humidity 80 1440 < th dose independent rect. 7 8
11 413.98 humidity 80 1440 > th dose independent rect. 7 8
15 414.95 humidity 80 720 > th dose independent rect. 8 14
19 415.81 humidity 80 1440 < th dose independent sin 2 NA
21 415.85 humidity 80 1440 < th dose independent rect. 7 13
27 416.40 humidity 60 720 > th dose dependent rect. 16 7
56 418.92 humidity 80 1440 > th dose independent sin 1 NA
57 418.95 humidity 80 1440 < th dose dependent rect. 15 21
66 420.00 humidity 60 720 > th dose dependent rect. 17 4
116 422.48 humidity 50 1440 > th dose dependent rect. 6 16
117 422.52 humidity 90 1440 < th dose dependent rect. 5 17
126 422.72 humidity 50 1440 > th dose dependent rect. 9 13
136 422.86 humidity 70 720 > th dose independent sin 13 NA
158 423.28 humidity 70 720 > th dose dependent rect. 9 14
169 423.56 humidity 90 720 < th dose dependent rect. 17 7
175 423.79 humidity 70 720 > th dose dependent rect. 19 1
209 424.31 humidity 50 1440 > th dose dependent sin 21 NA
238 424.92 humidity 80 1440 < th dose dependent rect. 23 23
244 425.01 humidity 80 1440 < th dose dependent rect. 7 21
260 425.09 humidity 80 1440 < th dose dependent rect. 3 23
262 425.10 humidity 80 1440 < th dose dependent no NA NA
311 425.44 humidity 80 1440 < th dose dependent rect. 11 23
316 425.51 humidity 50 720 > th dose dependent sin 17 NA
324 425.69 humidity 90 1440 < th dose dependent sin 21 NA
329 425.77 humidity 80 1440 < th dose dependent rect. 9 23
391 426.56 humidity 80 720 > th dose independent rect. 15 7
496 427.77 humidity 80 1440 < th dose dependent sin 15 NA
538 428.17 humidity 70 1440 > th dose independent rect. 17 21
704 430.22 humidity 80 1440 < th dose dependent rect. 15 11
751 430.76 humidity 90 1440 < th dose dependent rect. 13 9
759 430.85 humidity 70 720 > th dose independent rect. 15 11
766 430.90 humidity 70 720 > th dose independent rect. 15 16
806 431.17 humidity 80 720 > th dose independent sin 20 NA
835 431.51 humidity 80 1440 < th dose dependent rect. 13 14
1000 433.27 humidity 50 1440 > th dose dependent rect. 9 23