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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0322900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Apolipoprotein/apolipophorin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.35 (0.0579) R2 : 0.508
β1 : -0.722 (0.187) R2dD : 0.0174 R2D : -0.0121
β2 : 10 (1.28) R2dC : 6.48 R2C : -8.46
β3 : 12.7 (1.39) R2dE : 8.83 R2E : -6.18
β4 : -21.8 (4.52) R2dD*C : 1.46 R2D*C : -1.03
β5 : -20.9 (4.9) R2dD*E : 1.14 R2D*E : -1.48
γ1 : -0.545 (0.109) R2dN8 : 0.0382 R2N8 : 0.0343
σ : 0.937
deviance : 397.96
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_____
C
peak time of C : 17.4
E
wheather : radiation
threshold : 0.2158
memory length : 686
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.84
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
397.96 0.937 4.35 -0.722 10 12.7 -21.8 -20.9 -0.545 17.4 0.2158 686 6.84 --
475.93 1.02 3.95 -0.911 8.7 11.2 -2.25 -- -0.187 16.6 0.000891 643 7.65 --
422.47 0.957 4.33 -0.968 11.5 14.1 -- 2.03 -0.294 17.3 0.000545 673 6.7 --
423.19 0.958 4.36 -0.945 8.84 11.3 -- -- -0.654 16.7 0.009747 645 7.45 --
605.4 1.15 4.16 -1.7 -- 1.79 -- 0.973 -0.938 -- 148.9 9389 6.76 --
569.57 1.12 4.24 -1.32 1.56 -- 3.36 -- -0.87 5.38 -- -- -- --
587.17 1.13 4.26 -1.32 1.62 -- -- -- -0.888 4.41 -- -- -- --
590.9 1.13 4.27 -1.4 -- 1.79 -- -- -0.834 -- 152.8 6403 7.04 --
427.55 0.963 4.5 -- 12.9 15.4 -- -- -0.601 17.1 0.0598 645 6.64 --
728.28 1.26 4.27 -1.26 -- -- -- -- -0.846 -- -- -- -- --
633.03 1.18 4.23 -- 1.6 -- -- -- -0.742 4.43 -- -- -- --
636.96 1.18 4.24 -- -- 1.69 -- -- -0.714 -- 435.7 6569 8.45 --
769.85 1.3 4.24 -- -- -- -- -- -0.706 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 412.77 temperature 10 270 > th dose dependent rect. 5 20
10 425.60 temperature 30 90 < th dose dependent rect. 16 16
16 427.83 temperature 20 270 > th dose independent rect. 5 20
22 429.00 temperature 10 10 > th dose dependent rect. 6 22
25 429.87 temperature 10 270 > th dose dependent rect. 20 14
30 430.32 radiation 1 720 < th dose dependent rect. 15 16
36 431.06 temperature 30 270 < th dose dependent rect. 1 4
37 431.12 radiation 1 720 < th dose dependent rect. 13 19
39 431.19 radiation 1 720 < th dose dependent rect. 6 23
40 431.26 temperature 10 10 > th dose dependent rect. 8 19
61 433.65 radiation 1 720 < th dose dependent sin 13 NA
74 434.15 temperature 30 270 < th dose dependent rect. 23 7
85 434.94 radiation 1 270 < th dose dependent rect. 1 17
96 435.79 radiation 1 720 < th dose dependent rect. 23 23
105 436.31 radiation 1 720 < th dose dependent rect. 15 23
113 436.98 temperature 20 270 > th dose independent rect. 20 17
115 437.04 temperature 30 90 < th dose dependent rect. 11 21
130 437.91 radiation 1 720 < th dose dependent no NA NA
139 438.15 temperature 20 270 > th dose independent rect. 20 15
148 438.74 temperature 30 270 < th dose dependent rect. 11 19
173 440.08 radiation 1 720 < th dose dependent rect. 6 13
179 440.43 radiation 1 720 < th dose dependent rect. 1 23
199 441.49 temperature 10 43200 > th dose independent rect. 10 8
227 442.48 wind 1 14400 > th dose independent rect. 21 5
228 442.54 radiation 1 270 < th dose independent rect. 1 17
252 443.37 wind 1 14400 < th dose independent rect. 21 5
278 443.92 wind 1 43200 > th dose dependent rect. 11 1
279 443.92 wind 9 43200 < th dose dependent rect. 11 1
282 443.97 wind 1 14400 > th dose independent rect. 18 8
309 444.69 wind 1 43200 > th dose independent rect. 16 10
313 444.78 wind 5 43200 > th dose dependent rect. 12 1
316 444.86 wind 1 14400 < th dose independent rect. 18 8
328 445.17 temperature 30 10 < th dose dependent rect. 12 20
329 445.18 temperature 30 90 < th dose dependent sin 7 NA
335 445.42 wind 9 43200 < th dose dependent rect. 10 3
340 445.53 radiation 1 720 < th dose dependent sin 23 NA
354 445.91 wind 1 43200 < th dose dependent rect. 9 18
360 446.11 wind 3 43200 > th dose independent rect. 10 2
361 446.13 wind 1 14400 < th dose dependent rect. 16 12
375 446.52 wind 1 43200 < th dose independent rect. 15 11
388 446.72 wind 1 43200 < th dose dependent rect. 10 16
393 446.82 temperature 20 10 > th dose independent rect. 22 16
422 447.25 radiation 1 720 < th dose dependent rect. 4 17
435 447.60 wind 7 14400 > th dose independent rect. 5 9
446 447.92 wind 7 14400 < th dose independent rect. 5 9
447 447.92 wind 1 14400 < th dose dependent sin 15 NA
451 448.04 wind 3 43200 < th dose independent rect. 10 2
452 448.05 wind 1 43200 < th dose dependent sin 18 NA
457 448.17 radiation 1 270 < th dose dependent sin 3 NA
465 448.28 wind 7 14400 > th dose independent rect. 9 5
473 448.41 wind 7 14400 < th dose independent rect. 9 5
536 449.18 wind 1 43200 > th dose independent sin 16 NA
540 449.31 wind 1 14400 < th dose independent rect. 22 3
559 449.70 radiation 1 720 < th dose independent rect. 6 23
566 449.78 wind 3 43200 > th dose dependent rect. 15 1
568 449.79 wind 3 14400 > th dose dependent rect. 5 9
574 449.87 wind 7 43200 > th dose independent rect. 3 13
580 449.91 wind 7 43200 < th dose independent rect. 3 13
588 450.05 wind 1 43200 > th dose independent rect. 11 15
604 450.17 wind 1 43200 > th dose independent rect. 10 18
619 450.28 wind 3 14400 > th dose independent rect. 8 6
637 450.49 wind 9 43200 < th dose dependent rect. 14 3
643 450.54 wind 1 43200 > th dose dependent rect. 14 3
649 450.58 wind 1 270 > th dose independent rect. 1 4
657 450.66 wind 3 43200 < th dose independent rect. 8 5
670 450.81 wind 7 43200 < th dose dependent rect. 5 9
676 450.88 wind 1 43200 < th dose independent rect. 10 18
693 451.01 wind 9 43200 < th dose dependent rect. 4 11
695 451.04 radiation 1 720 < th dose dependent rect. 16 2
721 451.25 wind 7 14400 < th dose independent rect. 11 2
781 451.67 wind 5 43200 < th dose independent rect. 15 1
797 451.79 wind 5 43200 > th dose independent rect. 15 1
813 451.86 wind 1 43200 < th dose independent sin 16 NA
837 451.96 wind 7 14400 > th dose independent rect. 11 2
856 452.04 wind 3 43200 > th dose dependent rect. 5 11
883 452.26 wind 3 43200 > th dose dependent rect. 3 14
894 452.35 wind 7 43200 < th dose independent sin 2 NA
905 452.37 temperature 30 10 < th dose dependent rect. 2 6
932 452.48 wind 1 43200 < th dose dependent rect. 11 1
938 452.50 wind 1 43200 > th dose independent rect. 8 20
978 452.69 wind 7 43200 > th dose independent sin 2 NA
984 452.72 wind 1 43200 > th dose independent rect. 8 17
995 452.78 temperature 25 720 < th dose dependent rect. 16 5