Os03g0321700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 55.
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Os03g0321700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 55.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.56 | 0.688 | 7.01 | 0.34 | 0.6 | 1.42 | 2.47 | 0.786 | -0.00402 | 17.9 | 79 | 741 | -- | -- |
| 215.2 | 0.683 | 7.01 | 0.44 | 0.587 | 1.39 | 2.11 | -- | -0.0134 | 17.7 | 76.01 | 764 | -- | -- |
| 225.13 | 0.699 | 7.01 | 0.503 | 0.683 | 1.32 | -- | -0.482 | -0.00496 | 16.8 | 74.68 | 720 | -- | -- |
| 225.3 | 0.699 | 7.01 | 0.431 | 0.618 | 1.21 | -- | -- | -0.0231 | 16.6 | 76.34 | 722 | -- | -- |
| 228.87 | 0.705 | 7.01 | 0.536 | -- | 1.37 | -- | -0.0698 | -0.0915 | -- | 53.44 | 1091 | -- | -- |
| 247.9 | 0.738 | 7.02 | 0.482 | 0.594 | -- | -0.0236 | -- | -0.138 | 12.6 | -- | -- | -- | -- |
| 247.9 | 0.737 | 7.02 | 0.481 | 0.595 | -- | -- | -- | -0.138 | 12.6 | -- | -- | -- | -- |
| 228.85 | 0.705 | 7.02 | 0.534 | -- | 1.34 | -- | -- | -0.091 | -- | 54 | 1095 | -- | -- |
| 229.37 | 0.705 | 7.01 | -- | 0.713 | 1.22 | -- | -- | -0.0389 | 16.4 | 80.07 | 621 | -- | -- |
| 270.06 | 0.768 | 7.03 | 0.46 | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
| 254.01 | 0.746 | 7.03 | -- | 0.587 | -- | -- | -- | -0.192 | 12.6 | -- | -- | -- | -- |
| 235.88 | 0.715 | 7.01 | -- | -- | 1.34 | -- | -- | -0.0741 | -- | 64.75 | 1100 | -- | -- |
| 275.65 | 0.775 | 7.04 | -- | -- | -- | -- | -- | -0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.22 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 7 | 204.95 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 40 | 207.60 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 53 | 208.09 | humidity | 50.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 67 | 208.84 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 68 | 208.92 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 80 | 209.58 | humidity | 90.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 116 | 210.69 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 4 |
| 127 | 210.97 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 6 |
| 135 | 211.02 | humidity | 70.0 | 720 | > th | dose independent | rect. | 18 | 14 |
| 183 | 211.96 | humidity | 90.0 | 720 | < th | dose independent | rect. | 7 | 18 |
| 204 | 212.37 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 242 | 213.11 | humidity | 90.0 | 720 | < th | dose independent | rect. | 22 | 1 |
| 245 | 213.13 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 274 | 213.37 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 11 |
| 288 | 213.40 | humidity | 90.0 | 720 | < th | dose independent | rect. | 21 | 3 |
| 295 | 213.49 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 311 | 213.64 | humidity | 80.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 318 | 213.71 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 9 | 22 |
| 382 | 214.14 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 22 |
| 391 | 214.19 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 22 |
| 461 | 214.66 | humidity | 80.0 | 720 | > th | dose dependent | no | NA | NA |
| 515 | 215.11 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 522 | 215.13 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 540 | 215.25 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 550 | 215.30 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 551 | 215.31 | humidity | 80.0 | 720 | < th | dose independent | sin | 16 | NA |
| 563 | 215.41 | humidity | 90.0 | 720 | < th | dose independent | sin | 14 | NA |
| 576 | 215.51 | humidity | 70.0 | 720 | < th | dose independent | rect. | 18 | 13 |
| 601 | 215.64 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 606 | 215.70 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 608 | 215.71 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 652 | 216.00 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 659 | 216.07 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 709 | 216.38 | humidity | 90.0 | 720 | > th | dose independent | rect. | 22 | 1 |
| 715 | 216.42 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 7 | 22 |
| 718 | 216.42 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 769 | 216.72 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 14 |
| 779 | 216.78 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 9 |
| 805 | 217.00 | humidity | 90.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 868 | 217.40 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 11 |
| 875 | 217.44 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 902 | 217.53 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 21 |
| 907 | 217.55 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 920 | 217.56 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 925 | 217.58 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 942 | 217.66 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 12 |
| 949 | 217.72 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 952 | 217.74 | radiation | 1.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 979 | 217.93 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 983 | 217.93 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 984 | 217.95 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 3 |
| 989 | 217.96 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 19 |