Os03g0321100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0321100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.86 | 0.579 | 7.59 | -0.519 | 2.26 | -1.07 | -0.46 | -0.903 | -0.165 | 13.4 | 1010 | 10854 | -- | -- |
| 155.21 | 0.58 | 7.62 | -0.664 | 2.29 | -1.02 | -0.338 | -- | -0.177 | 13.3 | 1010 | 10856 | -- | -- |
| 152.71 | 0.576 | 7.59 | -0.539 | 2.26 | -1.07 | -- | -0.891 | -0.171 | 13.4 | 1010 | 10854 | -- | -- |
| 154.96 | 0.58 | 7.61 | -0.796 | 2.26 | -1.07 | -- | -- | -0.248 | 13.4 | 1010 | 10846 | -- | -- |
| 459.56 | 0.998 | 7.61 | -0.644 | -- | -1.09 | -- | -0.892 | -0.22 | -- | 1010 | 12033 | -- | -- |
| 198.69 | 0.661 | 7.54 | -0.463 | 2.23 | -- | -0.564 | -- | 0.116 | 13.3 | -- | -- | -- | -- |
| 199.98 | 0.662 | 7.54 | -0.482 | 2.23 | -- | -- | -- | 0.113 | 13.3 | -- | -- | -- | -- |
| 461.12 | 1 | 7.65 | -0.781 | -- | -1.04 | -- | -- | -0.235 | -- | 1010 | 12024 | -- | -- |
| 172.3 | 0.611 | 7.59 | -- | 2.24 | -0.915 | -- | -- | -0.111 | 13.4 | 1010 | 11504 | -- | -- |
| 505.67 | 1.05 | 7.57 | -0.57 | -- | -- | -- | -- | 0.0663 | -- | -- | -- | -- | -- |
| 206.12 | 0.672 | 7.53 | -- | 2.24 | -- | -- | -- | 0.167 | 13.4 | -- | -- | -- | -- |
| 480.98 | 1.02 | 7.62 | -- | -- | -0.908 | -- | -- | -0.162 | -- | 1010 | 12043 | -- | -- |
| 514.23 | 1.06 | 7.56 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.62 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 20 |
| 2 | 148.04 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 18 |
| 19 | 151.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 33 | 153.41 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 34 | 153.48 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 46 | 154.02 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 59 | 154.36 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 65 | 154.45 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 90 | 154.88 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 96 | 154.92 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 97 | 154.93 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 9 |
| 98 | 154.94 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 106 | 155.03 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 122 | 155.11 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 134 | 155.20 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 165 | 155.36 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 11 | NA |
| 182 | 155.41 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 195 | 155.45 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 211 | 155.52 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 212 | 155.52 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 228 | 155.55 | radiation | 20 | 14400 | < th | dose independent | rect. | 13 | 20 |
| 254 | 155.62 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 10 | 20 |
| 267 | 155.67 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 315 | 155.80 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 2 | 10 |
| 323 | 155.81 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 12 | NA |
| 366 | 155.90 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 447 | 156.07 | atmosphere | 1010 | 14400 | > th | dose independent | no | NA | NA |
| 453 | 156.07 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 11 | 19 |
| 454 | 156.07 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 457 | 156.08 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 462 | 156.08 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 466 | 156.09 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 493 | 156.16 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 544 | 156.25 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 596 | 156.34 | radiation | 20 | 14400 | < th | dose independent | sin | 12 | NA |
| 643 | 156.43 | radiation | 20 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 645 | 156.44 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 23 | 13 |
| 715 | 156.58 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 5 |
| 730 | 156.61 | humidity | 80 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 739 | 156.63 | humidity | 80 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 778 | 156.70 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 800 | 156.77 | atmosphere | 1010 | 14400 | < th | dose independent | no | NA | NA |
| 819 | 156.79 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 23 | 23 |
| 824 | 156.81 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 827 | 156.82 | radiation | 20 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 832 | 156.82 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 840 | 156.84 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 861 | 156.90 | radiation | 10 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 894 | 156.96 | radiation | 10 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 895 | 156.96 | radiation | 10 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 896 | 156.97 | radiation | 20 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 899 | 156.97 | radiation | 20 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 900 | 156.97 | radiation | 20 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 919 | 156.99 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 920 | 156.99 | radiation | 20 | 14400 | > th | dose dependent | rect. | 12 | 21 |
| 921 | 157.00 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 925 | 157.00 | radiation | 10 | 14400 | < th | dose dependent | rect. | 23 | 8 |
| 939 | 157.03 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 960 | 157.08 | wind | 9 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 963 | 157.09 | radiation | 20 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 985 | 157.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 995 | 157.16 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 5 |