Os03g0320900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Guanylate kinase family protein.
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Os03g0320900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Guanylate kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.63 | 0.363 | 9.75 | -0.0739 | 0.677 | 1 | 1.68 | 0.442 | -0.272 | 16.9 | 24.12 | 15 | -- | -- |
| 59.72 | 0.36 | 9.76 | -0.126 | 0.674 | 1.04 | 1.77 | -- | -0.286 | 17 | 24.1 | 15 | -- | -- |
| 65.04 | 0.376 | 9.72 | 0.0945 | 0.692 | 0.899 | -- | 1.83 | -0.2 | 16.3 | 24.2 | 15 | -- | -- |
| 66.95 | 0.381 | 9.75 | -0.126 | 0.676 | 1.06 | -- | -- | -0.285 | 16.4 | 24.1 | 16 | -- | -- |
| 81.23 | 0.42 | 9.73 | -0.0155 | -- | 1.47 | -- | 1.49 | -0.292 | -- | 24.1 | 76 | -- | -- |
| 75.45 | 0.407 | 9.73 | 0.0282 | 1.08 | -- | 1.83 | -- | -0.165 | 16.2 | -- | -- | -- | -- |
| 84.33 | 0.43 | 9.72 | 0.049 | 1.09 | -- | -- | -- | -0.154 | 15.8 | -- | -- | -- | -- |
| 82.02 | 0.422 | 9.76 | -0.248 | -- | 1.59 | -- | -- | -0.357 | -- | 24.1 | 74 | -- | -- |
| 67.36 | 0.382 | 9.75 | -- | 0.681 | 1.04 | -- | -- | -0.264 | 16.3 | 24.2 | 22 | -- | -- |
| 149.52 | 0.571 | 9.72 | 0.00395 | -- | -- | -- | -- | -0.184 | -- | -- | -- | -- | -- |
| 84.4 | 0.43 | 9.72 | -- | 1.09 | -- | -- | -- | -0.16 | 15.8 | -- | -- | -- | -- |
| 83.62 | 0.426 | 9.75 | -- | -- | 1.55 | -- | -- | -0.322 | -- | 24.19 | 74 | -- | -- |
| 149.52 | 0.571 | 9.72 | -- | -- | -- | -- | -- | -0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.51 | temperature | 15 | 10 | > th | dose dependent | sin | 23 | NA |
| 41 | 57.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 44 | 57.68 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 18 |
| 57 | 58.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 72 | 58.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 73 | 58.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 95 | 59.11 | temperature | 25 | 90 | > th | dose independent | rect. | 2 | 17 |
| 103 | 59.21 | temperature | 30 | 30 | < th | dose dependent | sin | 0 | NA |
| 115 | 59.36 | temperature | 25 | 10 | > th | dose independent | sin | 23 | NA |
| 133 | 59.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 134 | 59.61 | temperature | 25 | 10 | < th | dose independent | rect. | 4 | 16 |
| 146 | 59.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 147 | 59.81 | temperature | 25 | 10 | < th | dose independent | rect. | 4 | 14 |
| 151 | 59.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 192 | 60.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 213 | 60.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 216 | 60.26 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 234 | 60.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 242 | 60.37 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 274 | 60.48 | temperature | 25 | 10 | > th | dose independent | rect. | 9 | 11 |
| 296 | 60.54 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 328 | 60.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 343 | 60.65 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 385 | 60.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 19 |
| 425 | 60.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 15 |
| 563 | 61.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 629 | 61.31 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 672 | 61.42 | temperature | 25 | 10 | < th | dose independent | sin | 0 | NA |
| 687 | 61.44 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 755 | 61.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 847 | 61.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 857 | 61.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |