Os03g0320400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SRA-YDG domain containing protein.
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Os03g0320400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SRA-YDG domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 157.13 | 0.589 | 6.05 | 1.18 | 1.59 | 1.49 | 0.286 | -0.371 | 0.345 | 17.5 | 26.2 | 10 | -- | -- |
| 157.03 | 0.588 | 6.05 | 1.12 | 1.59 | 1.52 | 0.371 | -- | 0.332 | 17.5 | 26.2 | 10 | -- | -- |
| 157.04 | 0.588 | 6.04 | 1.18 | 1.58 | 1.48 | -- | -0.426 | 0.345 | 17.5 | 26.2 | 10 | -- | -- |
| 157.36 | 0.588 | 6.05 | 1.11 | 1.59 | 1.5 | -- | -- | 0.331 | 17.5 | 26.2 | 10 | -- | -- |
| 269.78 | 0.769 | 6.05 | 1.04 | -- | 1.22 | -- | -0.354 | 0.178 | -- | 23.88 | 14 | -- | -- |
| 191.14 | 0.648 | 6.13 | 0.762 | 1.41 | -- | 0.0112 | -- | 0.00517 | 18.4 | -- | -- | -- | -- |
| 191.14 | 0.647 | 6.13 | 0.762 | 1.41 | -- | -- | -- | 0.0052 | 18.4 | -- | -- | -- | -- |
| 269.93 | 0.769 | 6.06 | 1 | -- | 1.25 | -- | -- | 0.172 | -- | 24 | 15 | -- | -- |
| 187.17 | 0.641 | 6.1 | -- | 1.51 | 1.08 | -- | -- | 0.127 | 17.8 | 26.2 | 10 | -- | -- |
| 294.72 | 0.802 | 6.1 | 0.726 | -- | -- | -- | -- | -0.0247 | -- | -- | -- | -- | -- |
| 206.44 | 0.672 | 6.15 | -- | 1.4 | -- | -- | -- | -0.0797 | 18.4 | -- | -- | -- | -- |
| 294.18 | 0.801 | 6.09 | -- | -- | 0.917 | -- | -- | 0.0169 | -- | 24 | 6 | -- | -- |
| 308.61 | 0.82 | 6.12 | -- | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 153.02 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 25 | 155.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 21 |
| 28 | 156.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 66 | 157.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 70 | 157.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 86 | 157.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 89 | 157.90 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 97 | 158.08 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 102 | 158.15 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 109 | 158.31 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 110 | 158.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 113 | 158.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 118 | 158.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 124 | 158.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 125 | 158.74 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 127 | 158.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 130 | 158.79 | temperature | 30 | 10 | < th | dose dependent | sin | 12 | NA |
| 133 | 158.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 139 | 158.95 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 144 | 158.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 169 | 159.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 170 | 159.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 178 | 159.48 | temperature | 10 | 10 | > th | dose dependent | sin | 11 | NA |
| 199 | 159.69 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 277 | 160.56 | temperature | 20 | 30 | > th | dose dependent | rect. | 18 | 14 |
| 360 | 161.31 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 20 |
| 382 | 161.50 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 448 | 162.04 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 523 | 162.52 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 539 | 162.61 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 7 |
| 572 | 162.81 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 12 |
| 574 | 162.82 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 580 | 162.88 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 14 |
| 588 | 162.95 | temperature | 25 | 720 | > th | dose independent | rect. | 12 | 10 |
| 606 | 163.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 14 |
| 615 | 163.14 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 628 | 163.21 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 634 | 163.24 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 635 | 163.25 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 641 | 163.28 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 650 | 163.32 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 653 | 163.33 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 7 |
| 672 | 163.44 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 689 | 163.48 | wind | 9 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 721 | 163.60 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 11 |
| 725 | 163.63 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 729 | 163.64 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 778 | 163.75 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 4 |
| 827 | 163.95 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 14 |
| 863 | 164.05 | wind | 7 | 43200 | > th | dose dependent | sin | 13 | NA |
| 894 | 164.16 | wind | 9 | 43200 | < th | dose independent | sin | 13 | NA |
| 909 | 164.22 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 916 | 164.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 939 | 164.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 22 |
| 986 | 164.50 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |