FiT-DB / Search/ Help/ Sample detail

Os03g0319400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CIPK-like protein 1 (EC 2.7.1.37) (OsCK1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.5 (0.031) R2 : 0.803
β1 : -1.17 (0.114) R2dD : 0.0472 R2D : 0.0429
β2 : 2.66 (0.0802) R2dC : 0.485 R2C : 0.478
β3 : -2.4 (0.118) R2dE : 0.191 R2E : 0.26
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.578 (0.0677) R2dN8 : 0.0461 R2N8 : 0.0469
σ : 0.575
deviance : 152.63
__
_____
C
peak time of C : 5.36
E
wheather : temperature
threshold : 5.344
memory length : 277
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.4
open length of G : 20.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
150.86 0.577 13.4 -1.05 2.64 -2.4 0.786 0.703 -0.554 5.46 6.57 281 12.3 20.9
151.4 0.573 13.5 -1.08 2.64 -2.41 0.853 -- -0.57 5.44 6.656 276 12.4 20.8
152.27 0.575 13.4 -1.05 2.65 -2.41 -- 0.727 -0.555 5.41 6.454 281 12.3 20.8
152.63 0.575 13.5 -1.17 2.66 -2.4 -- -- -0.578 5.36 5.344 277 12.4 20.8
345.54 0.866 13.4 -0.539 -- -4.02 -- 2.53 -0.373 -- 24.17 326 11.5 20.7
233.41 0.716 13.5 -1.52 2.91 -- 1.39 -- -0.904 6.58 -- -- -- --
238.28 0.723 13.5 -1.5 2.91 -- -- -- -0.908 6.56 -- -- -- --
350.75 0.872 13.5 -0.956 -- -3.62 -- -- -0.587 -- 24.2 325 11.6 20
187.04 0.637 13.5 -- 2.64 -2.55 -- -- -0.502 5.32 6.6 275 12.4 21
680.74 1.22 13.6 -1.43 -- -- -- -- -0.848 -- -- -- -- --
297.43 0.807 13.5 -- 2.9 -- -- -- -0.741 6.59 -- -- -- --
373.96 0.901 13.5 -- -- -3.67 -- -- -0.463 -- 24.1 335 11.4 20.2
734.46 1.26 13.5 -- -- -- -- -- -0.69 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.78 temperature 10.0 270 > th dose dependent rect. 12 21
3 156.81 wind 1.0 270 > th dose dependent rect. 14 3
4 157.16 wind 3.0 270 > th dose independent rect. 14 3
5 157.69 humidity 90.0 270 < th dose independent rect. 14 3
7 157.92 wind 3.0 270 > th dose independent rect. 13 5
10 158.92 atmosphere 995.0 90 > th dose dependent rect. 19 20
12 159.44 temperature 10.0 90 > th dose dependent rect. 15 18
14 160.74 temperature 10.0 270 > th dose dependent rect. 14 3
15 160.75 humidity 90.0 270 < th dose independent rect. 13 5
18 161.31 temperature 10.0 270 > th dose dependent rect. 13 5
22 161.77 wind 1.0 270 > th dose dependent rect. 13 5
24 162.00 wind 1.0 270 > th dose independent rect. 17 21
28 162.66 wind 1.0 270 > th dose independent rect. 18 19
37 163.64 temperature 20.0 270 > th dose independent rect. 14 3
42 163.93 precipitation 0.1 270 < th dose independent rect. 17 21
43 163.93 precipitation 0.1 270 < th dose dependent rect. 17 21
44 164.06 precipitation 0.1 270 < th dose independent rect. 14 3
45 164.06 precipitation 0.1 270 < th dose dependent rect. 14 3
51 164.52 temperature 10.0 270 > th dose independent rect. 14 3
53 164.52 atmosphere 1010.0 270 < th dose independent rect. 14 3
55 164.52 temperature 10.0 270 > th dose independent rect. 17 21
58 164.68 wind 9.0 270 < th dose independent rect. 14 3
60 164.83 temperature 30.0 270 < th dose independent rect. 17 21
68 165.55 temperature 15.0 90 > th dose dependent rect. 15 5
75 165.89 radiation 10.0 270 > th dose independent rect. 14 17
76 165.94 atmosphere 995.0 270 > th dose independent rect. 14 3
79 166.12 atmosphere 995.0 270 > th dose independent rect. 17 21
80 166.17 radiation 40.0 270 < th dose independent rect. 14 3
89 166.50 precipitation 0.1 270 < th dose independent rect. 18 19
90 166.50 precipitation 0.1 270 < th dose dependent rect. 18 19
94 166.78 precipitation 0.1 270 < th dose independent rect. 13 5
95 166.78 precipitation 0.1 270 < th dose dependent rect. 13 5
97 166.90 wind 9.0 270 < th dose independent rect. 17 21
98 166.97 temperature 10.0 270 > th dose independent rect. 13 5
100 166.97 atmosphere 1010.0 270 < th dose independent rect. 13 5
102 166.97 temperature 10.0 270 > th dose independent rect. 18 19
104 167.00 humidity 60.0 270 > th dose independent rect. 23 10
105 167.02 atmosphere 995.0 270 > th dose independent rect. 18 19
108 167.09 atmosphere 1015.0 270 < th dose independent rect. 23 10
110 167.12 wind 9.0 270 < th dose independent rect. 13 5
123 167.55 radiation 40.0 270 < th dose independent rect. 23 10
125 167.66 radiation 1.0 270 > th dose independent rect. 14 3
128 167.69 temperature 15.0 270 > th dose independent rect. 23 10
147 168.21 atmosphere 995.0 270 > th dose independent rect. 13 5
151 168.30 temperature 20.0 90 > th dose independent rect. 15 18
158 168.48 atmosphere 995.0 270 > th dose independent rect. 23 10
159 168.48 temperature 10.0 270 > th dose independent rect. 9 14
162 168.53 radiation 10.0 270 < th dose dependent sin 14 NA
163 168.55 wind 9.0 270 < th dose independent rect. 23 10
165 168.58 wind 9.0 270 < th dose independent rect. 18 19
169 168.67 temperature 10.0 270 > th dose dependent rect. 23 10
172 168.74 humidity 50.0 270 > th dose independent rect. 17 21
176 168.90 temperature 10.0 270 > th dose dependent rect. 3 15
181 169.03 temperature 15.0 10 > th dose dependent rect. 16 17
189 169.32 temperature 20.0 270 > th dose independent rect. 13 19
190 169.34 temperature 15.0 10 > th dose dependent rect. 15 19
203 169.69 precipitation 0.1 270 < th dose independent rect. 23 10
204 169.69 precipitation 0.1 270 < th dose dependent rect. 23 10
222 170.04 precipitation 0.1 270 < th dose independent rect. 9 14
223 170.04 precipitation 0.1 270 < th dose dependent rect. 9 14
229 170.20 temperature 30.0 270 < th dose independent rect. 23 10
231 170.22 humidity 50.0 270 > th dose independent rect. 18 19
240 170.45 atmosphere 995.0 270 > th dose dependent rect. 14 3
241 170.45 temperature 10.0 10 > th dose dependent rect. 15 5
268 170.80 radiation 1.0 270 > th dose dependent rect. 14 17
269 170.81 radiation 1.0 270 > th dose dependent rect. 15 2
283 171.11 temperature 10.0 270 > th dose dependent rect. 1 17
297 171.41 radiation 1.0 270 > th dose independent rect. 13 6
312 171.57 radiation 10.0 270 > th dose independent sin 13 NA
313 171.57 wind 3.0 10 > th dose independent rect. 15 5
367 172.36 temperature 10.0 270 > th dose dependent rect. 23 20
368 172.38 wind 1.0 10 > th dose dependent rect. 15 5
383 172.66 wind 9.0 270 < th dose independent rect. 9 14
396 172.78 temperature 30.0 270 < th dose dependent rect. 8 16
454 173.59 humidity 50.0 270 > th dose dependent rect. 23 10
462 173.76 radiation 10.0 270 < th dose independent sin 14 NA
502 174.12 humidity 90.0 10 < th dose independent rect. 16 4
525 174.51 radiation 1.0 270 > th dose dependent sin 13 NA
539 174.80 atmosphere 995.0 270 > th dose dependent rect. 13 5
541 174.81 temperature 30.0 270 < th dose independent rect. 9 14
607 175.50 temperature 10.0 1440 > th dose independent rect. 17 3
610 175.50 radiation 30.0 1440 < th dose independent rect. 17 3
616 175.50 temperature 10.0 1440 > th dose independent rect. 20 21
623 175.55 temperature 10.0 270 > th dose dependent rect. 13 13
651 176.00 wind 1.0 270 > th dose independent rect. 9 14
670 176.10 radiation 1.0 270 > th dose independent rect. 12 21
683 176.20 humidity 50.0 270 > th dose independent rect. 9 14
686 176.23 atmosphere 1015.0 90 < th dose independent rect. 15 18
712 176.49 radiation 1.0 90 > th dose independent rect. 9 6
731 176.74 temperature 20.0 10 > th dose independent rect. 15 5
802 177.40 atmosphere 1015.0 90 < th dose dependent rect. 15 18
813 177.51 radiation 40.0 90 < th dose independent rect. 15 18
821 177.56 precipitation 0.1 10 < th dose independent rect. 15 5
822 177.56 precipitation 0.1 10 < th dose dependent rect. 15 5
842 177.80 atmosphere 1015.0 270 < th dose independent rect. 13 19
845 177.84 precipitation 0.1 90 < th dose independent rect. 15 18
846 177.84 precipitation 0.1 90 < th dose dependent rect. 15 18
858 177.98 temperature 10.0 90 > th dose independent rect. 9 6
861 177.98 atmosphere 1015.0 90 < th dose independent rect. 9 6
876 178.13 humidity 50.0 90 > th dose independent rect. 15 4
883 178.21 atmosphere 995.0 90 > th dose independent rect. 9 6
902 178.37 radiation 30.0 10 < th dose independent rect. 14 6
910 178.44 precipitation 0.1 90 < th dose independent rect. 9 6
911 178.44 precipitation 0.1 90 < th dose dependent rect. 9 6
979 178.80 temperature 10.0 10 > th dose independent rect. 15 5
981 178.80 atmosphere 1010.0 10 < th dose independent rect. 15 5
983 178.80 temperature 10.0 10 > th dose independent rect. 20 19
984 178.80 atmosphere 995.0 10 > th dose independent rect. 20 19