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Os03g0319100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SNF1 kinase complex anchoring protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0201) R2 : 0.509
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.855 (0.0479) R2dC : 0.343 R2C : 0.304
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.513 (0.0423) R2dN8 : 0.205 R2N8 : 0.165
σ : 0.379
deviance : 65.62
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_____
C
peak time of C : 0.69
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
52.53 0.341 12.5 0.431 0.87 0.474 0.184 -1.09 0.681 0.668 19.84 1440 -- --
55.5 0.347 12.5 0.417 0.873 0.464 0.201 -- 0.686 0.658 19.48 1412 -- --
52.54 0.338 12.5 0.433 0.871 0.476 -- -1.12 0.681 0.658 19.49 1408 -- --
55.58 0.347 12.5 0.389 0.863 0.484 -- -- 0.659 0.744 19.49 1451 -- --
68.17 0.387 12.5 0.327 -- 0.707 -- -0.239 0.542 -- 19.49 1408 -- --
63.06 0.372 12.5 0.312 0.851 -- 0.144 -- 0.548 0.66 -- -- -- --
63.15 0.372 12.5 0.306 0.85 -- -- -- 0.547 0.673 -- -- -- --
64.23 0.375 12.5 0.319 -- 0.629 -- -- 0.603 -- 3.15 1709 -- --
58.54 0.356 12.5 -- 0.857 0.48 -- -- 0.658 0.734 19.84 1500 -- --
108.42 0.487 12.5 0.337 -- -- -- -- 0.562 -- -- -- -- --
65.62 0.379 12.5 -- 0.855 -- -- -- 0.513 0.69 -- -- -- --
65.99 0.38 12.5 -- -- 0.641 -- -- 0.58 -- 3.733 1715 -- --
111.41 0.493 12.5 -- -- -- -- -- 0.524 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.37 radiation 20 1440 < th dose independent rect. 11 1
2 49.69 temperature 20 1440 < th dose independent rect. 22 3
4 49.78 temperature 20 1440 < th dose independent rect. 21 6
5 49.80 temperature 20 1440 > th dose independent rect. 21 6
8 49.82 temperature 20 1440 > th dose independent rect. 22 3
23 50.05 temperature 20 1440 < th dose independent rect. 21 10
24 50.05 radiation 40 1440 < th dose dependent rect. 11 1
28 50.12 temperature 20 1440 > th dose independent rect. 21 10
29 50.15 temperature 20 1440 > th dose independent rect. 5 2
32 50.17 radiation 20 1440 < th dose dependent rect. 11 1
40 50.25 temperature 20 1440 < th dose independent rect. 5 2
58 50.35 radiation 1 1440 > th dose dependent rect. 11 1
64 50.42 temperature 20 720 > th dose independent sin 9 NA
97 50.64 temperature 15 720 > th dose dependent rect. 1 4
119 50.71 atmosphere 995 43200 > th dose independent rect. 21 16
139 50.83 temperature 20 1440 < th dose independent rect. 3 1
142 50.83 atmosphere 995 43200 < th dose independent rect. 18 19
146 50.84 atmosphere 995 43200 < th dose independent rect. 21 16
166 50.92 atmosphere 995 43200 < th dose independent sin 7 NA
206 51.04 atmosphere 995 43200 > th dose independent sin 7 NA
234 51.15 atmosphere 995 43200 < th dose dependent sin 9 NA
236 51.16 temperature 20 1440 < th dose independent sin 10 NA
241 51.18 radiation 30 4320 < th dose independent rect. 7 1
280 51.27 temperature 30 1440 < th dose dependent rect. 3 1
292 51.32 atmosphere 995 43200 > th dose independent rect. 1 10
313 51.37 temperature 20 1440 < th dose dependent rect. 3 1
326 51.39 atmosphere 995 43200 < th dose dependent rect. 1 8
329 51.40 atmosphere 995 43200 < th dose independent rect. 3 6
330 51.40 atmosphere 995 43200 > th dose independent rect. 2 8
334 51.40 temperature 20 1440 < th dose dependent rect. 2 3
336 51.40 atmosphere 995 43200 < th dose dependent rect. 23 10
339 51.42 atmosphere 995 43200 < th dose independent rect. 2 8
343 51.42 atmosphere 995 43200 < th dose dependent rect. 18 15
345 51.43 atmosphere 995 43200 > th dose independent rect. 5 3
355 51.44 radiation 30 4320 < th dose independent rect. 4 4
365 51.45 atmosphere 995 43200 < th dose dependent rect. 11 19
368 51.46 radiation 30 4320 < th dose independent rect. 2 6
372 51.47 atmosphere 995 43200 > th dose independent rect. 3 6
377 51.47 atmosphere 995 43200 < th dose dependent rect. 4 4
398 51.52 radiation 10 1440 < th dose independent rect. 16 1
418 51.55 humidity 90 14400 > th dose dependent rect. 4 3
421 51.56 radiation 30 4320 < th dose independent rect. 17 15
439 51.58 radiation 20 1440 < th dose independent rect. 15 21
443 51.59 radiation 30 4320 < th dose independent rect. 22 10
445 51.60 radiation 30 4320 < th dose independent rect. 20 12
480 51.68 atmosphere 995 43200 < th dose independent rect. 5 3
515 51.75 radiation 10 1440 < th dose independent sin 19 NA
523 51.76 radiation 10 1440 < th dose independent rect. 11 19
559 51.84 temperature 25 720 < th dose dependent rect. 22 12
565 51.86 radiation 10 1440 < th dose independent rect. 9 9
572 51.87 radiation 10 1440 < th dose independent rect. 9 21
581 51.89 radiation 10 1440 < th dose independent rect. 11 7
590 51.90 radiation 10 1440 < th dose independent rect. 9 14
597 51.90 radiation 20 4320 > th dose dependent rect. 16 16
605 51.92 radiation 10 1440 < th dose independent rect. 11 10
609 51.92 humidity 90 14400 > th dose dependent rect. 23 1
626 51.93 temperature 15 720 > th dose dependent sin 8 NA
639 51.95 humidity 70 1440 > th dose independent rect. 11 1
690 52.02 temperature 15 720 > th dose dependent rect. 21 14
702 52.05 wind 9 43200 < th dose independent rect. 10 3
729 52.08 radiation 10 1440 < th dose independent rect. 13 5
735 52.08 radiation 40 10 < th dose dependent sin 4 NA
750 52.10 humidity 90 14400 > th dose dependent rect. 5 1
756 52.11 radiation 10 1440 > th dose dependent rect. 15 21
757 52.12 radiation 40 1440 < th dose independent rect. 11 1
766 52.13 wind 9 43200 > th dose independent rect. 10 3
790 52.15 wind 1 14400 < th dose dependent rect. 22 4
795 52.16 radiation 10 1440 < th dose independent rect. 13 10
807 52.17 humidity 90 14400 > th dose dependent rect. 22 3
829 52.19 temperature 25 720 < th dose dependent sin 8 NA
860 52.22 humidity 90 14400 > th dose dependent rect. 14 15
881 52.24 temperature 25 720 < th dose dependent rect. 3 6
892 52.25 radiation 1 1440 > th dose dependent rect. 9 3
897 52.25 humidity 90 14400 > th dose dependent rect. 15 17
984 52.36 wind 9 43200 < th dose independent rect. 9 5