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Os03g0319000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0612) R2 : 0.712
β1 : 2.51 (0.223) R2dD : 0.153 R2D : 0.183
β2 : 2.1 (0.116) R2dC : 0.218 R2C : 0.112
β3 : -3.4 (0.299) R2dE : 0.307 R2E : 0.269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.6 (1.03) R2dD*E : 0.155 R2D*E : -0.33
γ1 : 0.905 (0.115) R2dN8 : 0.0782 R2N8 : 0.0107
σ : 0.827
deviance : 315.44
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C
peak time of C : 17.4
E
wheather : radiation
threshold : 21.13
memory length : 3956
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16
open length of G : 14.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
316.27 0.836 11.5 2.49 2.14 -3.18 -0.725 -7.64 0.882 17.4 20.54 3958 16 15
358.8 0.882 11.7 2.72 2.08 -1.86 -1.53 -- 1.04 17.3 20 4043 15.8 14.9
315.44 0.827 11.5 2.51 2.1 -3.4 -- -8.6 0.905 17.4 21.13 3956 16 14.9
353.73 0.876 11.7 3.04 2.16 -1.74 -- -- 0.979 17.3 20 4044 15.8 14.8
552.03 1.09 11.5 2.17 -- -3.88 -- -8.86 0.746 -- 20.83 3960 16 14.9
408.68 0.948 11.7 3.88 2.23 -- -0.712 -- 1.22 17.2 -- -- -- --
409.93 0.948 11.7 3.88 2.23 -- -- -- 1.22 17.2 -- -- -- --
450.64 0.989 11.7 2.28 -- -3.62 -- -- 1.02 -- -25.69 6301 16.6 15.2
420.09 0.955 11.7 -- 1.82 -2.74 -- -- 1 16.4 28.83 32699 15.8 15
670.28 1.21 11.7 3.8 -- -- -- -- 1.16 -- -- -- -- --
807.31 1.33 11.8 -- 2.16 -- -- -- 0.787 17.3 -- -- -- --
644.02 1.18 11.7 -- -- -2.75 -- -- 0.93 -- 28.2 32867 15.8 15.2
1052.09 1.51 11.8 -- -- -- -- -- 0.741 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 328.31 radiation 20 4320 > th dose dependent rect. 16 15
2 329.32 radiation 20 4320 > th dose dependent rect. 16 1
16 334.56 radiation 30 43200 > th dose independent rect. 15 2
32 336.14 humidity 90 14400 < th dose dependent rect. 22 1
33 339.74 radiation 10 14400 < th dose independent rect. 17 12
35 340.13 radiation 10 14400 < th dose independent rect. 17 2
36 340.16 radiation 10 14400 < th dose independent rect. 17 4
39 340.25 radiation 10 14400 < th dose independent rect. 17 8
44 340.92 humidity 80 14400 > th dose dependent rect. 22 1
45 341.32 humidity 60 43200 > th dose independent rect. 15 20
46 341.90 humidity 60 43200 < th dose independent rect. 15 20
47 342.05 humidity 60 43200 < th dose dependent rect. 14 2
68 343.06 humidity 60 43200 < th dose independent rect. 14 22
79 345.08 wind 1 14400 > th dose independent rect. 2 1
82 345.39 humidity 50 43200 > th dose independent rect. 14 4
83 345.43 wind 1 43200 > th dose independent rect. 22 1
84 345.57 wind 1 14400 < th dose independent rect. 2 1
85 345.65 humidity 60 14400 < th dose dependent rect. 17 16
100 347.29 humidity 50 14400 < th dose dependent rect. 16 19
105 347.74 wind 9 43200 > th dose dependent rect. 16 16
106 347.75 wind 9 43200 < th dose independent rect. 17 15
109 347.82 atmosphere 995 43200 < th dose independent rect. 18 6
111 347.95 humidity 60 14400 > th dose independent rect. 18 14
117 348.15 wind 9 43200 > th dose independent rect. 20 8
124 348.38 atmosphere 995 43200 < th dose dependent rect. 17 7
131 348.49 humidity 60 14400 < th dose dependent rect. 17 3
132 348.52 wind 9 43200 < th dose independent rect. 20 8
148 348.63 wind 9 43200 > th dose independent rect. 17 15
169 348.91 atmosphere 995 43200 > th dose independent rect. 18 6
171 348.92 wind 7 43200 > th dose dependent rect. 18 14
176 348.99 atmosphere 995 43200 < th dose dependent rect. 16 9
177 349.03 humidity 60 14400 > th dose independent rect. 18 4
182 349.17 humidity 60 14400 > th dose independent rect. 18 7
187 349.25 wind 9 43200 < th dose independent rect. 20 4
192 349.30 humidity 70 14400 < th dose dependent rect. 19 13
206 349.54 atmosphere 995 43200 < th dose dependent rect. 15 12
210 349.66 wind 9 43200 > th dose independent rect. 20 4
229 349.98 humidity 60 43200 > th dose independent sin 11 NA
232 350.03 wind 7 43200 > th dose dependent rect. 18 10
233 350.04 humidity 60 43200 > th dose independent rect. 16 1
235 350.11 wind 7 43200 > th dose dependent rect. 20 8
261 350.41 atmosphere 995 43200 < th dose independent rect. 17 13
265 350.53 humidity 60 14400 < th dose independent rect. 18 14
268 350.60 atmosphere 995 43200 > th dose independent rect. 17 14
269 350.60 humidity 60 43200 < th dose dependent sin 17 NA
280 350.87 wind 7 43200 > th dose dependent rect. 20 12
281 350.88 humidity 60 43200 < th dose independent sin 11 NA
282 350.88 humidity 60 14400 < th dose independent rect. 18 4
310 351.04 humidity 80 14400 > th dose dependent rect. 21 5
332 351.38 humidity 60 43200 > th dose independent rect. 16 5
357 351.62 wind 7 4320 > th dose dependent rect. 19 1
360 351.65 wind 7 43200 < th dose independent rect. 18 11
365 351.71 wind 7 43200 > th dose independent rect. 18 11
381 351.88 radiation 20 4320 < th dose independent rect. 16 15
400 352.01 wind 9 14400 > th dose independent rect. 15 2
405 352.04 wind 7 4320 > th dose independent rect. 19 1
408 352.09 wind 7 4320 < th dose independent rect. 19 1
427 352.25 wind 9 43200 > th dose dependent rect. 20 4
441 352.35 wind 9 43200 < th dose independent sin 11 NA
459 352.52 wind 7 43200 > th dose dependent rect. 18 6
480 352.77 wind 9 43200 > th dose independent sin 11 NA
485 352.85 atmosphere 995 43200 < th dose dependent rect. 18 4
522 353.15 wind 9 14400 > th dose dependent rect. 15 2
524 353.17 humidity 70 14400 < th dose dependent rect. 19 1
568 353.38 wind 7 43200 > th dose dependent sin 11 NA
574 353.42 humidity 50 43200 < th dose independent rect. 14 4
575 353.45 radiation 30 4320 > th dose dependent rect. 15 17
584 353.53 humidity 60 43200 < th dose independent rect. 15 6
589 353.54 wind 1 43200 < th dose independent rect. 22 1
704 354.48 humidity 60 43200 < th dose independent sin 5 NA
724 354.63 humidity 60 43200 < th dose independent rect. 16 1
790 355.22 humidity 80 14400 < th dose independent rect. 17 1
803 355.38 radiation 30 4320 < th dose independent rect. 15 17
819 355.52 wind 5 43200 > th dose independent rect. 6 2
820 355.52 radiation 30 4320 > th dose independent rect. 15 2
843 355.57 wind 9 14400 < th dose independent rect. 15 2
850 355.60 wind 7 43200 < th dose independent rect. 8 1
867 355.79 wind 5 43200 > th dose dependent rect. 6 3
908 356.02 wind 5 4320 > th dose dependent rect. 18 10
951 356.09 temperature 20 10 > th dose dependent rect. 5 18
999 356.39 wind 1 43200 < th dose independent rect. 5 1