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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0318400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0595) R2 : 0.1
β1 : 1.47 (0.255) R2dD : 0.106 R2D : -0.0535
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.77 (0.26) R2dE : 0.163 R2E : -0.0431
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.601 (0.146) R2dN8 : 0.0654 R2N8 : -0.0517
σ : 1.06
deviance : 516.22
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 6.139
memory length : 9768
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
501.6 1.05 3.5 1.76 0.506 -1.3 -0.668 2.72 0.564 15.2 19.47 1501 -- --
515.89 1.06 3.64 1.41 0.46 -1.3 -0.679 -- 0.463 15.2 18.44 1511 -- --
502.64 1.04 3.5 1.77 0.436 -1.35 -- 2.95 0.567 15.1 18.5 1357 -- --
505.93 1.05 3.53 1.36 0.458 -1.58 -- -- 0.654 15.6 15.68 9614 -- --
511.71 1.05 3.5 1.78 -- -1.48 -- 2.98 0.579 -- 18.43 1240 -- --
549.38 1.1 3.66 0.514 0.548 -- -0.674 -- 0.0653 15.1 -- -- -- --
550.88 1.1 3.67 0.499 0.544 -- -- -- 0.0612 15 -- -- -- --
516.22 1.06 3.54 1.47 -- -1.77 -- -- 0.601 -- 6.139 9768 -- --
527.83 1.07 3.63 -- 0.471 -0.873 -- -- 0.252 14.7 28.3 8847 -- --
567.88 1.11 3.67 0.476 -- -- -- -- 0.0471 -- -- -- -- --
557.44 1.1 3.68 -- 0.534 -- -- -- 0.00561 15 -- -- -- --
540.61 1.08 3.62 -- -- -0.884 -- -- 0.265 -- 28.3 9673 -- --
573.85 1.12 3.68 -- -- -- -- -- -0.00568 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 488.97 wind 9.0 43200 > th dose dependent rect. 20 11
3 489.07 wind 9.0 43200 > th dose independent rect. 17 19
4 489.12 wind 9.0 43200 > th dose independent rect. 19 13
6 489.27 wind 9.0 43200 > th dose dependent rect. 17 15
8 489.49 wind 9.0 43200 < th dose independent rect. 17 18
12 489.59 wind 9.0 43200 < th dose independent rect. 19 13
13 489.61 humidity 80.0 43200 > th dose dependent rect. 20 1
16 489.80 wind 9.0 43200 > th dose dependent rect. 20 8
17 489.86 wind 7.0 43200 > th dose dependent rect. 17 19
18 489.95 wind 9.0 43200 > th dose independent rect. 17 16
22 490.04 wind 9.0 43200 > th dose independent sin 11 NA
23 490.05 wind 9.0 43200 > th dose independent rect. 19 9
24 490.06 wind 9.0 43200 < th dose independent sin 11 NA
28 490.22 wind 9.0 43200 > th dose dependent sin 12 NA
33 490.43 wind 9.0 43200 > th dose dependent rect. 20 5
35 490.46 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
36 490.47 wind 9.0 43200 < th dose independent rect. 19 9
40 490.55 wind 9.0 43200 < th dose independent rect. 17 16
49 490.77 wind 9.0 43200 > th dose independent rect. 19 5
84 491.38 wind 9.0 43200 < th dose independent rect. 14 21
93 491.50 wind 9.0 43200 > th dose dependent rect. 14 18
96 491.60 wind 9.0 43200 > th dose independent rect. 14 21
115 491.90 wind 9.0 43200 < th dose independent rect. 20 5
146 492.31 wind 9.0 43200 < th dose independent rect. 17 22
170 492.58 wind 9.0 43200 > th dose independent rect. 17 22
224 493.48 humidity 90.0 1440 < th dose independent rect. 15 4
235 493.68 humidity 70.0 43200 > th dose dependent rect. 9 3
237 493.70 wind 7.0 43200 > th dose dependent rect. 6 22
245 493.74 wind 9.0 43200 < th dose independent rect. 19 23
246 493.74 wind 7.0 43200 > th dose dependent rect. 1 23
251 493.77 wind 7.0 43200 > th dose dependent no NA NA
256 493.78 wind 7.0 43200 > th dose dependent rect. 23 23
275 493.92 humidity 70.0 43200 > th dose dependent rect. 10 1
278 493.93 wind 7.0 43200 > th dose dependent rect. 6 18
293 494.00 wind 9.0 43200 < th dose independent rect. 6 22
295 494.01 wind 5.0 43200 > th dose dependent rect. 6 1
296 494.02 wind 9.0 43200 > th dose independent rect. 19 23
305 494.07 wind 9.0 43200 < th dose independent no NA NA
310 494.09 wind 9.0 43200 < th dose independent rect. 22 23
314 494.11 wind 9.0 43200 < th dose independent rect. 2 23
331 494.18 humidity 80.0 43200 > th dose independent rect. 8 5
344 494.26 wind 9.0 43200 > th dose independent rect. 6 22
365 494.37 wind 9.0 43200 > th dose independent rect. 3 22
369 494.37 humidity 70.0 43200 > th dose dependent rect. 8 5
370 494.38 wind 9.0 43200 > th dose independent no NA NA
378 494.40 wind 9.0 43200 > th dose independent rect. 23 23
397 494.45 humidity 80.0 43200 > th dose independent rect. 8 13
399 494.46 wind 1.0 43200 > th dose dependent rect. 6 6
405 494.48 wind 1.0 43200 > th dose dependent rect. 20 16
407 494.49 wind 9.0 43200 > th dose independent rect. 6 19
431 494.57 wind 1.0 43200 > th dose dependent rect. 7 2
448 494.67 wind 3.0 43200 > th dose dependent rect. 20 19
493 494.80 wind 9.0 43200 > th dose dependent sin 18 NA
495 494.81 wind 7.0 43200 > th dose dependent sin 2 NA
510 494.84 precipitation 0.1 43200 > th dose dependent rect. 23 8
514 494.85 precipitation 0.1 43200 > th dose dependent rect. 23 11
517 494.86 wind 7.0 43200 > th dose dependent rect. 10 23
541 494.97 humidity 80.0 43200 < th dose independent rect. 9 3
557 495.00 wind 3.0 43200 > th dose dependent sin 4 NA
558 495.00 precipitation 0.1 43200 > th dose dependent rect. 1 6
563 495.01 wind 9.0 43200 < th dose dependent rect. 20 16
566 495.02 radiation 30.0 1440 < th dose dependent rect. 18 6
577 495.06 humidity 80.0 43200 < th dose independent rect. 8 13
587 495.10 wind 9.0 43200 < th dose independent rect. 22 20
594 495.13 precipitation 0.1 43200 > th dose dependent rect. 1 9
596 495.14 wind 9.0 43200 > th dose independent rect. 10 23
611 495.17 wind 1.0 43200 > th dose dependent sin 6 NA
613 495.17 wind 7.0 43200 > th dose dependent rect. 1 15
627 495.23 wind 9.0 43200 < th dose independent rect. 10 23
629 495.23 wind 7.0 43200 > th dose dependent rect. 3 13
645 495.28 precipitation 0.1 43200 > th dose independent rect. 23 8
653 495.30 atmosphere 995.0 43200 < th dose independent rect. 5 10
654 495.30 precipitation 0.1 43200 < th dose independent rect. 23 11
658 495.30 precipitation 0.1 43200 < th dose dependent rect. 23 11
660 495.31 precipitation 0.1 43200 > th dose independent rect. 23 11
666 495.34 atmosphere 995.0 43200 > th dose independent rect. 5 10
678 495.37 precipitation 0.1 43200 < th dose independent rect. 23 8
681 495.37 precipitation 0.1 43200 < th dose dependent rect. 23 8
687 495.38 wind 9.0 43200 < th dose dependent rect. 6 6
694 495.39 wind 7.0 43200 > th dose dependent rect. 6 10
699 495.41 humidity 80.0 43200 < th dose independent rect. 8 5
711 495.44 wind 9.0 43200 > th dose dependent rect. 10 18
720 495.46 radiation 30.0 1440 < th dose dependent rect. 18 3
738 495.49 wind 5.0 43200 > th dose dependent rect. 9 2
739 495.49 humidity 70.0 43200 > th dose dependent rect. 8 12
765 495.55 precipitation 0.1 43200 < th dose independent rect. 1 6
767 495.55 precipitation 0.1 43200 < th dose dependent rect. 1 6
771 495.56 wind 9.0 43200 > th dose dependent rect. 10 21
775 495.58 precipitation 0.1 43200 < th dose independent rect. 1 9
776 495.58 precipitation 0.1 43200 < th dose dependent rect. 1 9
785 495.60 precipitation 0.1 43200 > th dose independent rect. 1 6
815 495.63 wind 9.0 43200 > th dose dependent rect. 10 15
818 495.64 wind 9.0 43200 < th dose dependent sin 6 NA
821 495.65 wind 9.0 43200 < th dose dependent rect. 7 2
891 495.80 atmosphere 995.0 43200 < th dose dependent rect. 11 12
910 495.85 atmosphere 995.0 43200 < th dose independent rect. 4 12
930 495.89 atmosphere 995.0 43200 < th dose dependent sin 20 NA
971 495.97 atmosphere 995.0 43200 < th dose independent sin 1 NA
974 495.97 wind 9.0 43200 < th dose dependent rect. 24 14
983 495.99 wind 9.0 43200 < th dose independent sin 1 NA