Os03g0317100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0317100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.82 | 0.481 | 5.32 | 1.56 | 0.686 | 0.421 | 0.143 | 5.94 | 0.13 | 15.2 | 14.6 | 5394 | -- | -- |
| 124.49 | 0.52 | 5.53 | 0.104 | 0.66 | 0.683 | -0.0727 | -- | -0.123 | 15.2 | 31.16 | 1811 | -- | -- |
| 104.62 | 0.476 | 5.32 | 1.52 | 0.678 | 0.561 | -- | 6.13 | 0.115 | 15.2 | 13.82 | 7975 | -- | -- |
| 124.46 | 0.52 | 5.53 | 0.106 | 0.676 | 0.67 | -- | -- | -0.119 | 15.1 | 31.2 | 1847 | -- | -- |
| 130.46 | 0.532 | 5.32 | 1.48 | -- | 0.59 | -- | 6.16 | 0.0987 | -- | 10.7 | 9040 | -- | -- |
| 137.62 | 0.55 | 5.56 | 0.238 | 0.651 | -- | -0.101 | -- | -0.226 | 15.3 | -- | -- | -- | -- |
| 137.65 | 0.549 | 5.56 | 0.237 | 0.651 | -- | -- | -- | -0.227 | 15.3 | -- | -- | -- | -- |
| 147.27 | 0.568 | 5.57 | 0.106 | -- | 0.787 | -- | -- | -0.286 | -- | 25.38 | 47520 | -- | -- |
| 123.5 | 0.518 | 5.52 | -- | 0.694 | 0.614 | -- | -- | -0.0846 | 15.1 | 31.03 | 1172 | -- | -- |
| 161.58 | 0.594 | 5.56 | 0.209 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 139.13 | 0.552 | 5.56 | -- | 0.647 | -- | -- | -- | -0.253 | 15.3 | -- | -- | -- | -- |
| 147.56 | 0.568 | 5.57 | -- | -- | 0.803 | -- | -- | -0.298 | -- | 25.38 | 47520 | -- | -- |
| 162.73 | 0.595 | 5.56 | -- | -- | -- | -- | -- | -0.267 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.37 | temperature | 15 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 3 | 101.53 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 4 | 101.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 5 | 101.58 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 7 | 101.66 | temperature | 15 | 4320 | > th | dose dependent | rect. | 9 | 12 |
| 8 | 101.67 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 21 | 101.82 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 22 | 101.82 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 24 | 101.83 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 17 |
| 47 | 102.02 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 85 | 102.27 | temperature | 20 | 14400 | > th | dose independent | rect. | 9 | 19 |
| 86 | 102.27 | temperature | 15 | 4320 | > th | dose dependent | sin | 21 | NA |
| 90 | 102.28 | temperature | 20 | 14400 | > th | dose independent | rect. | 11 | 17 |
| 92 | 102.28 | temperature | 15 | 4320 | > th | dose dependent | rect. | 9 | 5 |
| 110 | 102.34 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 122 | 102.36 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 142 | 102.43 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 152 | 102.45 | temperature | 20 | 14400 | < th | dose independent | rect. | 11 | 17 |
| 184 | 102.51 | temperature | 20 | 14400 | > th | dose independent | sin | 16 | NA |
| 231 | 102.60 | temperature | 30 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 268 | 102.68 | wind | 5 | 43200 | > th | dose dependent | sin | 5 | NA |
| 271 | 102.69 | temperature | 20 | 14400 | < th | dose independent | sin | 15 | NA |
| 301 | 102.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 345 | 102.85 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 15 |
| 359 | 102.88 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 361 | 102.88 | temperature | 20 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 389 | 102.92 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 486 | 103.07 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 14 |
| 499 | 103.09 | temperature | 20 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 507 | 103.10 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 542 | 103.13 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 546 | 103.13 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 6 |
| 575 | 103.18 | wind | 7 | 43200 | > th | dose independent | sin | 6 | NA |
| 576 | 103.18 | temperature | 20 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 583 | 103.18 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 675 | 103.29 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 704 | 103.35 | wind | 7 | 43200 | < th | dose independent | sin | 6 | NA |
| 758 | 103.43 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 813 | 103.53 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 824 | 103.54 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 842 | 103.56 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 845 | 103.57 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 849 | 103.57 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 857 | 103.59 | wind | 9 | 43200 | < th | dose independent | sin | 10 | NA |
| 870 | 103.61 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 15 |
| 888 | 103.64 | wind | 9 | 43200 | > th | dose independent | sin | 10 | NA |