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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0314400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.01 (0.0371) R2 : 0.599
β1 : 1.28 (0.14) R2dD : 0.084 R2D : 0.0483
β2 : 1.96 (0.0953) R2dC : 0.378 R2C : 0.374
β3 : 0.839 (0.129) R2dE : 0.0462 R2E : 0.0313
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.592 (0.0833) R2dN8 : 0.0684 R2N8 : 0.111
σ : 0.682
deviance : 214.68
__
_____
C
peak time of C : 18.3
E
wheather : atmosphere
threshold : 1011
memory length : 5587
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
198.17 0.661 5.03 1.23 1.96 0.91 2.53 0.456 -0.603 18.3 1011 5890 -- --
198.6 0.656 5.01 1.34 1.96 0.863 2.54 -- -0.582 18.3 1011 5796 -- --
213.9 0.681 5.03 1.15 1.98 0.911 -- 0.616 -0.607 18.3 1011 5897 -- --
214.68 0.682 5.01 1.28 1.96 0.839 -- -- -0.592 18.3 1011 5587 -- --
414.01 0.948 4.99 1.11 -- 1.01 -- 0.639 -0.653 -- 1010 5222 -- --
220.16 0.696 5.06 1.04 1.98 -- 2.48 -- -0.79 18.3 -- -- -- --
235.34 0.718 5.06 1.01 1.99 -- -- -- -0.782 18.3 -- -- -- --
413.73 0.947 4.99 1.27 -- 0.968 -- -- -0.687 -- 1010 5309 -- --
254.71 0.743 5.02 -- 1.94 0.431 -- -- -0.715 18.4 1011 9904 -- --
441.9 0.982 5.02 0.958 -- -- -- -- -0.825 -- -- -- -- --
262.32 0.758 5.08 -- 1.98 -- -- -- -0.895 18.3 -- -- -- --
452.08 0.99 5.02 -- -- 0.649 -- -- -0.851 -- 1010 4701 -- --
466.13 1.01 5.04 -- -- -- -- -- -0.932 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.96 radiation 20 14400 < th dose independent rect. 18 12
2 194.13 humidity 50 720 > th dose dependent rect. 19 6
3 194.16 humidity 70 14400 > th dose independent rect. 19 12
6 194.30 humidity 70 14400 > th dose independent rect. 19 7
8 194.31 humidity 70 14400 > th dose independent rect. 19 10
9 194.32 humidity 70 14400 > th dose independent rect. 19 3
21 195.08 temperature 25 720 > th dose dependent rect. 22 1
22 195.13 humidity 70 14400 < th dose independent rect. 19 12
25 195.48 humidity 70 14400 < th dose independent rect. 19 3
35 195.64 temperature 25 720 > th dose dependent rect. 18 11
40 195.88 radiation 40 14400 < th dose independent rect. 8 1
43 195.92 radiation 40 14400 < th dose independent rect. 6 3
44 195.92 radiation 40 14400 < th dose independent rect. 24 9
48 195.95 radiation 40 14400 < th dose independent rect. 4 5
54 195.97 radiation 40 14400 < th dose independent rect. 16 17
64 196.13 humidity 70 720 > th dose dependent rect. 19 2
65 196.15 radiation 20 14400 > th dose dependent rect. 16 16
68 196.23 radiation 40 14400 > th dose dependent rect. 8 1
70 196.29 temperature 30 720 < th dose dependent rect. 19 1
89 196.53 temperature 25 720 > th dose dependent rect. 18 1
97 196.82 radiation 20 14400 < th dose independent rect. 16 15
102 196.99 temperature 25 720 < th dose independent rect. 19 1
107 197.09 humidity 90 720 > th dose dependent rect. 23 1
111 197.17 radiation 20 14400 < th dose independent rect. 5 1
112 197.22 humidity 60 14400 > th dose independent rect. 8 1
113 197.25 temperature 25 720 > th dose dependent rect. 20 6
118 197.29 humidity 50 720 > th dose dependent rect. 18 13
120 197.33 temperature 25 720 > th dose independent rect. 18 1
167 197.54 humidity 50 14400 > th dose independent rect. 18 17
186 197.59 humidity 50 14400 > th dose independent rect. 10 1
195 197.70 humidity 50 14400 > th dose independent rect. 8 3
212 197.75 radiation 40 14400 < th dose independent sin 12 NA
214 197.75 temperature 30 30 < th dose dependent rect. 23 8
215 197.77 humidity 50 14400 > th dose independent rect. 3 8
228 197.86 humidity 50 14400 < th dose independent rect. 9 3
250 197.91 radiation 40 14400 > th dose dependent sin 12 NA
252 197.91 radiation 1 14400 > th dose dependent rect. 18 12
253 197.92 humidity 50 14400 > th dose independent rect. 22 13
267 197.96 humidity 60 14400 < th dose independent rect. 7 2
276 197.97 humidity 70 14400 < th dose dependent rect. 8 1
314 198.10 radiation 1 14400 > th dose dependent rect. 4 2
376 198.32 humidity 60 14400 < th dose dependent rect. 20 14
381 198.34 humidity 60 14400 < th dose dependent rect. 6 4
432 198.52 radiation 20 14400 < th dose independent rect. 3 3
525 198.68 humidity 70 14400 < th dose dependent rect. 18 13
546 198.75 radiation 40 14400 < th dose dependent rect. 17 15
557 198.78 radiation 20 14400 < th dose independent rect. 16 2
567 198.80 radiation 20 14400 < th dose independent rect. 16 9
570 198.80 temperature 30 720 < th dose dependent rect. 18 6
575 198.81 radiation 10 14400 < th dose independent rect. 16 20
585 198.84 radiation 20 14400 < th dose dependent rect. 4 2
591 198.85 radiation 20 14400 < th dose dependent rect. 23 7
614 198.88 radiation 10 14400 > th dose dependent rect. 17 1
647 198.91 humidity 50 14400 < th dose independent sin 8 NA
657 198.92 radiation 30 14400 > th dose independent rect. 16 16
659 198.92 humidity 70 14400 < th dose dependent rect. 18 4
718 199.00 humidity 70 720 > th dose independent rect. 19 1
743 199.03 temperature 25 720 > th dose dependent sin 12 NA
752 199.06 humidity 50 14400 > th dose independent sin 8 NA
769 199.09 radiation 10 14400 < th dose independent rect. 11 20
778 199.10 humidity 80 720 > th dose independent rect. 18 4
848 199.19 radiation 10 14400 < th dose independent rect. 8 23
856 199.20 temperature 20 1440 > th dose dependent rect. 14 3
874 199.24 radiation 40 14400 > th dose independent rect. 7 2
906 199.26 humidity 60 43200 < th dose independent rect. 14 1
919 199.29 radiation 10 14400 > th dose dependent sin 11 NA
924 199.30 radiation 40 14400 < th dose independent rect. 14 2
930 199.31 radiation 40 14400 < th dose independent rect. 14 11
935 199.31 temperature 20 1440 > th dose dependent rect. 14 1
950 199.32 radiation 10 14400 < th dose independent no NA NA
958 199.32 radiation 10 14400 < th dose independent rect. 4 15