Os03g0311000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0311000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.85 | 0.55 | 9.73 | 0.934 | 2.36 | -1.2 | 2.48 | 0.153 | -0.199 | 6.44 | 20.27 | 1358 | -- | -- |
| 136.72 | 0.545 | 9.74 | 0.9 | 2.36 | -1.2 | 2.48 | -- | -0.208 | 6.4 | 20.27 | 1264 | -- | -- |
| 151.61 | 0.573 | 9.74 | 0.99 | 2.37 | -1.24 | -- | 0.165 | -0.194 | 6.3 | 20.39 | 1276 | -- | -- |
| 151.66 | 0.574 | 9.74 | 0.962 | 2.36 | -1.26 | -- | -- | -0.197 | 6.29 | 20.4 | 1260 | -- | -- |
| 408.29 | 0.941 | 9.8 | 0.942 | -- | -1.42 | -- | -0.557 | -0.115 | -- | 20.8 | 531 | -- | -- |
| 167.93 | 0.608 | 9.8 | 0.409 | 2.33 | -- | 2.71 | -- | -0.464 | 6.51 | -- | -- | -- | -- |
| 186.09 | 0.639 | 9.8 | 0.445 | 2.35 | -- | -- | -- | -0.473 | 6.42 | -- | -- | -- | -- |
| 304.92 | 0.813 | 9.85 | 0.779 | -- | -1.96 | -- | -- | -0.217 | -- | 28.2 | 472 | -- | -- |
| 171.25 | 0.609 | 9.78 | -- | 2.36 | -0.819 | -- | -- | -0.373 | 6.26 | 20.6 | 1120 | -- | -- |
| 471.88 | 1.02 | 9.85 | 0.505 | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
| 191.32 | 0.647 | 9.81 | -- | 2.35 | -- | -- | -- | -0.523 | 6.41 | -- | -- | -- | -- |
| 322.44 | 0.836 | 9.81 | -- | -- | -1.86 | -- | -- | -0.279 | -- | 28.27 | 471 | -- | -- |
| 478.61 | 1.02 | 9.86 | -- | -- | -- | -- | -- | -0.48 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 2 | 134.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 3 | 135.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 8 | 135.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 10 | 135.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 15 | 135.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 11 |
| 34 | 136.27 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 43 | 136.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 15 |
| 45 | 136.39 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 46 | 136.40 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 52 | 136.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 17 |
| 55 | 136.45 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 59 | 136.46 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 19 |
| 67 | 136.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 15 |
| 71 | 136.53 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 80 | 136.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 85 | 136.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 99 | 136.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 133 | 136.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 20 |
| 161 | 136.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 308 | 137.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 363 | 137.34 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 406 | 137.50 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 421 | 137.57 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 454 | 137.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 495 | 137.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 608 | 138.87 | wind | 1 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 617 | 138.91 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 631 | 139.05 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 634 | 139.09 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 637 | 139.10 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 641 | 139.12 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 15 |
| 646 | 139.14 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 648 | 139.17 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 651 | 139.18 | humidity | 50 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 662 | 139.22 | wind | 3 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 666 | 139.25 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 669 | 139.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 674 | 139.29 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 685 | 139.33 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 23 | 15 |
| 699 | 139.40 | atmosphere | 995 | 43200 | < th | dose independent | sin | 6 | NA |
| 704 | 139.41 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 718 | 139.50 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 20 |
| 728 | 139.58 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 734 | 139.61 | humidity | 90 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 756 | 139.74 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 765 | 139.77 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 8 | NA |
| 772 | 139.79 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 781 | 139.84 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 16 | 18 |
| 793 | 139.89 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 796 | 139.91 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 9 |
| 818 | 140.01 | atmosphere | 995 | 43200 | > th | dose independent | sin | 6 | NA |
| 824 | 140.04 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 835 | 140.08 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 14 |
| 836 | 140.09 | wind | 3 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 864 | 140.19 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 22 | 12 |
| 870 | 140.21 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 871 | 140.21 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 873 | 140.21 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 880 | 140.24 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 907 | 140.37 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 12 |
| 970 | 140.64 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 975 | 140.67 | wind | 1 | 1440 | > th | dose independent | rect. | 6 | 1 |