Os03g0310900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0310900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.5 | 0.677 | 3.6 | -0.962 | 0.235 | 4.86 | 0.854 | -24.1 | -0.0524 | 4.9 | 999.4 | 242 | -- | -- |
| 212.92 | 0.685 | 3.36 | 0.395 | 0.241 | 0.932 | 0.887 | -- | -0.0642 | 4.82 | 996.7 | 1353 | -- | -- |
| 209.34 | 0.674 | 3.6 | -0.965 | 0.246 | 4.86 | -- | -24.1 | -0.0549 | 5.27 | 999.4 | 241 | -- | -- |
| 214.35 | 0.682 | 3.36 | 0.372 | 0.243 | 0.903 | -- | -- | -0.0544 | 4.08 | 998.1 | 535 | -- | -- |
| 212.43 | 0.679 | 3.6 | -0.966 | -- | 4.87 | -- | -24.1 | -0.056 | -- | 999.4 | 241 | -- | -- |
| 221.33 | 0.697 | 3.37 | 0.447 | 0.242 | -- | 0.897 | -- | -0.0852 | 4.79 | -- | -- | -- | -- |
| 223.4 | 0.7 | 3.37 | 0.444 | 0.25 | -- | -- | -- | -0.0896 | 5.14 | -- | -- | -- | -- |
| 217.5 | 0.687 | 3.36 | 0.374 | -- | 0.875 | -- | -- | -0.0532 | -- | 998.1 | 534 | -- | -- |
| 217.47 | 0.687 | 3.36 | -- | 0.265 | 0.932 | -- | -- | -0.0922 | 5.08 | 998.2 | 566 | -- | -- |
| 226.68 | 0.704 | 3.37 | 0.453 | -- | -- | -- | -- | -0.0833 | -- | -- | -- | -- | -- |
| 228.59 | 0.707 | 3.38 | -- | 0.258 | -- | -- | -- | -0.139 | 5.08 | -- | -- | -- | -- |
| 221.1 | 0.693 | 3.37 | -- | -- | 0.932 | -- | -- | -0.0881 | -- | 998.1 | 552 | -- | -- |
| 232.09 | 0.711 | 3.38 | -- | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 203.41 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 2 | 16 |
| 21 | 204.79 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 33 | 205.07 | atmosphere | 1000 | 270 | < th | dose independent | sin | 1 | NA |
| 56 | 205.64 | wind | 3 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 81 | 206.08 | atmosphere | 1000 | 270 | < th | dose dependent | sin | 3 | NA |
| 94 | 206.28 | wind | 3 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 178 | 207.03 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 194 | 207.10 | wind | 1 | 4320 | < th | dose dependent | rect. | 3 | 3 |
| 198 | 207.12 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 253 | 207.39 | wind | 3 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 294 | 207.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 8 |
| 297 | 207.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 331 | 207.70 | wind | 3 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 377 | 207.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 403 | 207.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 405 | 207.93 | atmosphere | 1000 | 720 | < th | dose dependent | sin | 7 | NA |
| 413 | 207.95 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 445 | 208.03 | wind | 3 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 459 | 208.08 | atmosphere | 1000 | 270 | > th | dose independent | sin | 23 | NA |
| 474 | 208.14 | wind | 3 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 667 | 208.64 | atmosphere | 1000 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 671 | 208.66 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 680 | 208.69 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 700 | 208.77 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 2 | 9 |
| 701 | 208.77 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 1 | 11 |
| 715 | 208.81 | temperature | 30 | 90 | > th | dose independent | rect. | 16 | 19 |
| 736 | 208.86 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 750 | 208.92 | atmosphere | 1000 | 90 | < th | dose dependent | no | NA | NA |
| 772 | 208.98 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 863 | 209.20 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 962 | 209.35 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 979 | 209.39 | wind | 1 | 1440 | > th | dose dependent | rect. | 8 | 4 |