Os03g0309800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to PPR2.
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Os03g0309800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to PPR2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.29 | 0.316 | 9.65 | -0.0489 | 0.896 | -0.474 | -0.347 | 0.662 | -0.502 | 20 | 20.2 | 89 | -- | -- |
| 47.4 | 0.321 | 9.66 | -0.163 | 0.895 | -0.517 | -0.434 | -- | -0.515 | 19.9 | 20.37 | 89 | -- | -- |
| 45.57 | 0.314 | 9.65 | -0.036 | 0.898 | -0.472 | -- | 0.663 | -0.501 | 20 | 20.3 | 84 | -- | -- |
| 47.78 | 0.322 | 9.66 | -0.116 | 0.908 | -0.529 | -- | -- | -0.531 | 19.9 | 20.18 | 70 | -- | -- |
| 88.07 | 0.439 | 9.62 | -0.026 | -- | -0.537 | -- | 0.692 | -0.5 | -- | 20.1 | 45 | -- | -- |
| 57.43 | 0.355 | 9.68 | -0.301 | 0.918 | -- | -0.456 | -- | -0.621 | 20.5 | -- | -- | -- | -- |
| 58.09 | 0.357 | 9.68 | -0.287 | 0.919 | -- | -- | -- | -0.621 | 20.4 | -- | -- | -- | -- |
| 90.56 | 0.445 | 9.64 | -0.145 | -- | -0.576 | -- | -- | -0.526 | -- | 20.18 | 70 | -- | -- |
| 48.27 | 0.324 | 9.66 | -- | 0.897 | -0.549 | -- | -- | -0.506 | 19.9 | 20.1 | 72 | -- | -- |
| 105.23 | 0.479 | 9.66 | -0.292 | -- | -- | -- | -- | -0.63 | -- | -- | -- | -- | -- |
| 60.26 | 0.363 | 9.68 | -- | 0.92 | -- | -- | -- | -0.589 | 20.4 | -- | -- | -- | -- |
| 91.1 | 0.446 | 9.63 | -- | -- | -0.598 | -- | -- | -0.507 | -- | 20.18 | 70 | -- | -- |
| 107.47 | 0.484 | 9.65 | -- | -- | -- | -- | -- | -0.598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.72 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 2 | 43.80 | wind | 7.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 3 | 43.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 4 | 43.97 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 5 | 43.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 6 | 43.97 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 7 | 43.99 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 8 | 44.08 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 9 | 44.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 10 | 44.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 12 | 44.19 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 13 | 44.25 | radiation | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 25 | 44.34 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 30 | 44.40 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 31 | 44.44 | wind | 7.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 32 | 44.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 33 | 44.47 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 34 | 44.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 36 | 44.50 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 39 | 44.52 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 40 | 44.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 41 | 44.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 43 | 44.54 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 50 | 44.59 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 51 | 44.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 54 | 44.63 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 57 | 44.66 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 62 | 44.69 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 63 | 44.69 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 65 | 44.70 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 67 | 44.70 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 74 | 44.77 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 78 | 44.78 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 80 | 44.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 8 | 6 |
| 81 | 44.80 | temperature | 20.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 82 | 44.81 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 85 | 44.82 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 95 | 44.84 | temperature | 20.0 | 90 | > th | dose independent | rect. | 3 | 23 |
| 98 | 44.86 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 103 | 44.86 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 18 |
| 108 | 44.88 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 109 | 44.89 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 128 | 44.96 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 135 | 44.96 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 157 | 45.02 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 170 | 45.03 | humidity | 60.0 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 202 | 45.09 | humidity | 60.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 209 | 45.10 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 215 | 45.11 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 217 | 45.11 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 222 | 45.12 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 241 | 45.15 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 259 | 45.17 | humidity | 80.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 261 | 45.17 | wind | 5.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 271 | 45.19 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 300 | 45.22 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 354 | 45.28 | wind | 5.0 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 357 | 45.28 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 359 | 45.28 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 22 |
| 378 | 45.31 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 379 | 45.31 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 391 | 45.32 | temperature | 20.0 | 90 | < th | dose independent | rect. | 19 | 20 |
| 405 | 45.34 | humidity | 80.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 407 | 45.34 | wind | 5.0 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 413 | 45.34 | temperature | 20.0 | 10 | < th | dose independent | rect. | 9 | 22 |
| 418 | 45.35 | wind | 5.0 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 419 | 45.35 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 436 | 45.37 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 441 | 45.37 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 22 |
| 453 | 45.38 | temperature | 20.0 | 90 | < th | dose independent | rect. | 8 | 23 |
| 484 | 45.40 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 11 |
| 492 | 45.41 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 18 |
| 508 | 45.42 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 23 |
| 517 | 45.43 | wind | 5.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 546 | 45.44 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 586 | 45.46 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 14 |
| 589 | 45.47 | temperature | 20.0 | 30 | > th | dose independent | no | NA | NA |
| 590 | 45.47 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 602 | 45.47 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 605 | 45.48 | temperature | 20.0 | 10 | < th | dose independent | sin | 7 | NA |
| 612 | 45.48 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 622 | 45.49 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 625 | 45.49 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 632 | 45.49 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 648 | 45.50 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 658 | 45.51 | temperature | 20.0 | 10 | < th | dose independent | rect. | 22 | 15 |
| 661 | 45.51 | temperature | 20.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 675 | 45.52 | temperature | 20.0 | 10 | < th | dose independent | rect. | 14 | 23 |
| 678 | 45.52 | temperature | 20.0 | 10 | < th | dose independent | rect. | 21 | 23 |
| 695 | 45.53 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 709 | 45.54 | temperature | 20.0 | 30 | < th | dose independent | no | NA | NA |
| 715 | 45.54 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 725 | 45.54 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 726 | 45.54 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 8 | 2 |
| 741 | 45.55 | temperature | 20.0 | 30 | < th | dose independent | rect. | 1 | 23 |
| 742 | 45.55 | temperature | 20.0 | 30 | < th | dose independent | rect. | 11 | 23 |
| 755 | 45.56 | wind | 7.0 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 769 | 45.56 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 797 | 45.58 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 801 | 45.58 | temperature | 20.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 830 | 45.60 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 846 | 45.60 | temperature | 20.0 | 30 | < th | dose independent | rect. | 5 | 23 |
| 867 | 45.61 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 870 | 45.61 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 924 | 45.63 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 927 | 45.63 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 980 | 45.65 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 23 |
| 994 | 45.66 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 13 | 1 |