Os03g0309400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pectinesterase family protein.
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Os03g0309400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pectinesterase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 225.07 | 0.705 | 3.14 | 0.447 | 0.0938 | 0.993 | 0.7 | 4.4 | -0.082 | 16.1 | 1001 | 5826 | -- | -- |
| 242.82 | 0.726 | 3.17 | 0.362 | 0.0426 | 1.37 | 0.838 | -- | -0.0653 | 17 | 1001 | 5975 | -- | -- |
| 225.41 | 0.699 | 3.13 | 0.457 | 0.158 | 0.985 | -- | 4.43 | -0.0792 | 12.3 | 1001 | 5823 | -- | -- |
| 237.04 | 0.717 | 3.18 | 0.292 | 0.206 | 1.3 | -- | -- | -0.128 | 12 | 998.6 | 11293 | -- | -- |
| 226.97 | 0.702 | 3.14 | 0.451 | -- | 1 | -- | 4.43 | -0.0815 | -- | 1000 | 5822 | -- | -- |
| 281.38 | 0.786 | 3.2 | 0.505 | 0.156 | -- | 0.281 | -- | -0.18 | 13.5 | -- | -- | -- | -- |
| 281.52 | 0.786 | 3.19 | 0.513 | 0.162 | -- | -- | -- | -0.18 | 12.1 | -- | -- | -- | -- |
| 237.82 | 0.718 | 3.17 | 0.257 | -- | 1.3 | -- | -- | -0.0651 | -- | 998.6 | 11392 | -- | -- |
| 238.21 | 0.719 | 3.17 | -- | 0.147 | 1.35 | -- | -- | -0.0875 | 11.6 | 998.7 | 11387 | -- | -- |
| 283.18 | 0.786 | 3.2 | 0.508 | -- | -- | -- | -- | -0.182 | -- | -- | -- | -- | -- |
| 288.46 | 0.794 | 3.21 | -- | 0.155 | -- | -- | -- | -0.237 | 12 | -- | -- | -- | -- |
| 239.5 | 0.721 | 3.18 | -- | -- | 1.36 | -- | -- | -0.0868 | -- | 998.7 | 11394 | -- | -- |
| 289.98 | 0.795 | 3.21 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 210.90 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 3 | 212.12 | wind | 7 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 8 | 212.66 | wind | 5 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 13 | 213.10 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 29 | 214.31 | wind | 7 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 31 | 214.36 | humidity | 90 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 47 | 215.06 | wind | 7 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 69 | 215.58 | wind | 9 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 142 | 218.20 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 8 |
| 155 | 219.16 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 163 | 220.51 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 171 | 221.64 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 173 | 221.93 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 175 | 221.95 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 179 | 221.95 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 215 | 223.08 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 2 |
| 231 | 224.03 | temperature | 20 | 720 | < th | dose independent | rect. | 10 | 10 |
| 237 | 224.10 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 238 | 224.16 | wind | 7 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 250 | 224.63 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 1 |
| 252 | 225.04 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 14 |
| 253 | 225.09 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 255 | 225.11 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 327 | 225.73 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 353 | 225.97 | humidity | 90 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 364 | 226.34 | wind | 7 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 409 | 226.79 | humidity | 90 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 428 | 226.92 | humidity | 70 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 506 | 227.82 | humidity | 80 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 511 | 227.88 | humidity | 70 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 514 | 227.95 | atmosphere | 995 | 14400 | > th | dose independent | sin | 22 | NA |
| 515 | 227.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 526 | 227.99 | atmosphere | 995 | 14400 | < th | dose independent | sin | 22 | NA |
| 539 | 228.10 | wind | 7 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 575 | 228.44 | humidity | 70 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 610 | 228.64 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 621 | 228.70 | humidity | 80 | 10 | < th | dose independent | rect. | 20 | 11 |
| 666 | 228.88 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 22 |
| 668 | 228.89 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 22 | NA |
| 892 | 229.34 | atmosphere | 995 | 14400 | > th | dose independent | no | NA | NA |
| 893 | 229.34 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 894 | 229.34 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 895 | 229.34 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 906 | 229.36 | humidity | 50 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 994 | 229.48 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 14 | 21 |