Os03g0309300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, hold transcript.
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Os03g0309300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, hold transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 136.83 | 0.55 | 14.2 | -1.91 | 1.57 | 1.98 | 1.31 | -4.05 | -1.84 | 18.9 | 24 | 677 | -- | -- |
| 142.72 | 0.556 | 14.1 | -1.26 | 1.62 | 1.85 | 0.47 | -- | -1.67 | 19.1 | 23.6 | 610 | -- | -- |
| 140.12 | 0.551 | 14.2 | -1.7 | 1.58 | 1.93 | -- | -2.7 | -1.78 | 19 | 23.82 | 638 | -- | -- |
| 141.75 | 0.555 | 14.1 | -1.21 | 1.55 | 1.72 | -- | -- | -1.64 | 19.3 | 24.14 | 592 | -- | -- |
| 216.19 | 0.685 | 14.2 | -1.94 | -- | 3.16 | -- | -2.98 | -1.91 | -- | 24.26 | 561 | -- | -- |
| 193.3 | 0.652 | 14.1 | -0.82 | 2.28 | -- | 1.13 | -- | -1.45 | 19.2 | -- | -- | -- | -- |
| 196.68 | 0.657 | 14.1 | -0.844 | 2.29 | -- | -- | -- | -1.45 | 19.2 | -- | -- | -- | -- |
| 224.18 | 0.697 | 14.1 | -1.44 | -- | 2.95 | -- | -- | -1.76 | -- | 24.4 | 560 | -- | -- |
| 176.96 | 0.62 | 14.1 | -- | 1.68 | 1.39 | -- | -- | -1.44 | 19.3 | 24.89 | 567 | -- | -- |
| 473.05 | 1.02 | 14 | -0.886 | -- | -- | -- | -- | -1.49 | -- | -- | -- | -- | -- |
| 215.45 | 0.687 | 14.1 | -- | 2.29 | -- | -- | -- | -1.35 | 19.2 | -- | -- | -- | -- |
| 276.67 | 0.775 | 14 | -- | -- | 2.71 | -- | -- | -1.57 | -- | 24.6 | 543 | -- | -- |
| 493.75 | 1.04 | 14 | -- | -- | -- | -- | -- | -1.39 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.94 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 2 | 136.03 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 3 | 136.14 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 4 | 136.29 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 7 | 136.52 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 8 | 136.55 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 11 | 136.79 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 27 | 137.09 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 33 | 137.18 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 36 | 137.18 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 42 | 137.38 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 45 | 137.40 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 46 | 137.42 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 51 | 137.54 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 53 | 137.56 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 60 | 137.62 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 64 | 137.68 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 66 | 137.72 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 68 | 137.74 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 71 | 137.78 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 90 | 137.97 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 93 | 137.98 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 6 |
| 111 | 138.10 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 118 | 138.12 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 6 |
| 126 | 138.17 | temperature | 20.0 | 720 | > th | dose dependent | sin | 22 | NA |
| 138 | 138.24 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 15 |
| 141 | 138.25 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 154 | 138.32 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 158 | 138.33 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 166 | 138.36 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 13 |
| 203 | 138.49 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 221 | 138.56 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 9 |
| 232 | 138.60 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 233 | 138.60 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 254 | 138.71 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 288 | 138.82 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 13 | 8 |
| 296 | 138.85 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 22 | NA |
| 333 | 138.98 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 8 | 8 |
| 397 | 139.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 427 | 139.20 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 452 | 139.29 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 460 | 139.30 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 14 | 19 |
| 501 | 139.36 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 20 |
| 508 | 139.38 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 11 | 21 |
| 512 | 139.39 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 13 | 16 |
| 514 | 139.39 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 14 | 22 |
| 519 | 139.41 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 10 | 19 |
| 521 | 139.42 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 532 | 139.42 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 17 | NA |
| 647 | 139.60 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 22 |
| 701 | 139.67 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 737 | 139.71 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 23 |
| 812 | 139.81 | temperature | 20.0 | 270 | > th | dose dependent | sin | 16 | NA |