Os03g0309000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os03g0309000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.48 | 0.356 | 11.8 | -0.231 | 0.639 | -0.685 | 0.349 | 1.56 | 0.578 | 0.565 | 19.39 | 1585 | -- | -- |
| 60.45 | 0.362 | 11.8 | -0.058 | 0.577 | -0.913 | 0.52 | -- | 0.609 | 0.408 | 18.92 | 2258 | -- | -- |
| 57.78 | 0.354 | 11.8 | -0.24 | 0.644 | -0.721 | -- | 1.6 | 0.58 | 0.631 | 19.17 | 1627 | -- | -- |
| 61.04 | 0.364 | 11.8 | -0.0853 | 0.589 | -0.97 | -- | -- | 0.621 | 0.549 | 18.73 | 2015 | -- | -- |
| 80.64 | 0.418 | 11.8 | -0.389 | -- | -0.713 | -- | 1.53 | 0.53 | -- | 19.12 | 2341 | -- | -- |
| 75.19 | 0.407 | 11.7 | 0.323 | 0.635 | -- | 0.41 | -- | 0.782 | 0.59 | -- | -- | -- | -- |
| 75.9 | 0.408 | 11.7 | 0.307 | 0.634 | -- | -- | -- | 0.78 | 0.684 | -- | -- | -- | -- |
| 81.33 | 0.42 | 11.8 | -0.143 | -- | -1.14 | -- | -- | 0.59 | -- | 18.5 | 2370 | -- | -- |
| 60.82 | 0.363 | 11.7 | -- | 0.63 | -1.19 | -- | -- | 0.639 | 0.54 | 18.57 | 1556 | -- | -- |
| 101.07 | 0.47 | 11.7 | 0.33 | -- | -- | -- | -- | 0.791 | -- | -- | -- | -- | -- |
| 78.39 | 0.414 | 11.7 | -- | 0.639 | -- | -- | -- | 0.745 | 0.706 | -- | -- | -- | -- |
| 81.37 | 0.42 | 11.7 | -- | -- | -0.939 | -- | -- | 0.641 | -- | 19.6 | 958 | -- | -- |
| 103.94 | 0.476 | 11.7 | -- | -- | -- | -- | -- | 0.754 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.71 | radiation | 10 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 2 | 55.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 56.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 5 | 56.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 7 | 56.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 8 | 56.67 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 9 | 56.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 11 | 56.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 20 |
| 12 | 56.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 17 |
| 15 | 56.80 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 20 | 56.82 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 23 | 56.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 8 |
| 24 | 56.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 75 | 57.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 20 |
| 98 | 57.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 22 |
| 139 | 57.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 141 | 57.35 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 147 | 57.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 191 | 57.50 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 23 |
| 226 | 57.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 230 | 57.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 241 | 57.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 4 |
| 247 | 57.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 6 |
| 263 | 57.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 266 | 57.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 278 | 57.84 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 281 | 57.86 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 284 | 57.87 | temperature | 20 | 1440 | < th | dose dependent | sin | 11 | NA |
| 293 | 57.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 297 | 57.90 | radiation | 30 | 4320 | < th | dose independent | rect. | 4 | 4 |
| 306 | 57.93 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 313 | 57.95 | radiation | 30 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 314 | 57.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 316 | 57.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 359 | 58.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 450 | 58.18 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 459 | 58.20 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 533 | 58.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 548 | 58.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 21 |
| 624 | 58.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 634 | 58.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 654 | 58.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 718 | 58.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 724 | 58.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 758 | 58.65 | humidity | 90 | 14400 | > th | dose independent | sin | 7 | NA |
| 865 | 58.77 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 866 | 58.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 880 | 58.79 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 884 | 58.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 902 | 58.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 933 | 58.84 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 940 | 58.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 941 | 58.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 9 |