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Os03g0308800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0216) R2 : 0.857
β1 : -1.17 (0.0793) R2dD : 0.0703 R2D : 0.0605
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.41 (0.0692) R2dE : 0.761 R2E : 0.772
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.386 (0.0462) R2dN8 : 0.0295 R2N8 : 0.0131
σ : 0.405
deviance : 75.54
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.17
memory length : 926
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 4.44
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.24 0.359 13 -1.27 3.84 2.95 1.21 0.886 -0.414 11.7 0.0001835 288 5.28 --
59.42 0.359 13 -1.29 3.95 3.04 0.535 -- -0.405 11.7 0.05808 285 5.43 --
60.49 0.362 13 -1.23 3.78 2.98 -- 0.0213 -0.384 11.7 0.0101 314 5.64 --
60.27 0.362 13 -1.23 3.93 3.02 -- -- -0.42 11.7 2.856e-05 288 5.46 --
82.15 0.422 13.1 -0.775 -- 3.21 -- 1.28 -0.553 -- 0.169 906 4.09 --
93.75 0.454 13 -1.34 2.64 -- 0.981 -- -0.481 7.94 -- -- -- --
96.58 0.46 13 -1.32 2.64 -- -- -- -0.482 7.93 -- -- -- --
75.54 0.405 13 -1.17 -- 3.41 -- -- -0.386 -- 0.17 926 4.44 --
99.22 0.464 12.9 -- 3.93 3.1 -- -- -0.276 11.8 0.009992 306 5.66 --
476.1 1.02 13.1 -1.29 -- -- -- -- -0.447 -- -- -- -- --
142.17 0.558 13 -- 2.63 -- -- -- -0.335 7.97 -- -- -- --
110.66 0.49 13 -- -- 3.46 -- -- -0.249 -- 0.004375 937 4.58 --
519.81 1.06 13 -- -- -- -- -- -0.304 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.86 radiation 1.0 270 > th dose independent rect. 9 7
2 53.40 atmosphere 995.0 270 > th dose independent rect. 16 17
3 53.61 precipitation 0.1 270 < th dose independent rect. 9 7
4 53.61 precipitation 0.1 270 < th dose dependent rect. 9 7
5 53.62 radiation 40.0 270 < th dose independent rect. 16 17
6 53.68 wind 9.0 270 < th dose independent rect. 16 17
7 53.70 temperature 10.0 270 > th dose independent rect. 9 7
8 53.70 atmosphere 1015.0 270 < th dose independent rect. 9 7
9 53.70 temperature 10.0 270 > th dose independent rect. 16 17
10 53.96 wind 9.0 270 < th dose independent rect. 9 7
12 55.32 precipitation 0.1 270 < th dose independent rect. 10 17
13 55.32 precipitation 0.1 270 < th dose dependent rect. 10 17
15 55.82 radiation 1.0 270 < th dose dependent rect. 20 9
18 55.95 radiation 1.0 270 < th dose independent rect. 20 9
20 55.98 wind 9.0 270 < th dose independent rect. 20 9
24 56.04 temperature 10.0 270 > th dose independent rect. 20 9
25 56.04 temperature 30.0 270 < th dose independent rect. 20 9
26 56.04 humidity 50.0 270 > th dose independent rect. 20 9
29 56.04 atmosphere 995.0 270 > th dose independent rect. 20 9
33 56.04 temperature 10.0 270 > th dose independent rect. 5 15
34 56.04 atmosphere 1015.0 270 < th dose independent rect. 5 15
35 56.19 temperature 10.0 270 > th dose dependent rect. 21 7
37 56.36 wind 9.0 270 < th dose independent rect. 5 15
39 56.43 wind 1.0 270 > th dose independent rect. 9 7
40 56.52 humidity 50.0 270 > th dose independent rect. 3 7
41 56.57 temperature 10.0 270 > th dose independent rect. 3 7
42 56.57 atmosphere 995.0 270 > th dose independent rect. 3 7
43 56.57 atmosphere 1015.0 270 < th dose independent rect. 3 7
44 56.57 temperature 10.0 270 > th dose independent rect. 10 17
45 56.59 wind 9.0 270 < th dose independent rect. 3 7
47 56.67 precipitation 0.1 270 < th dose independent rect. 20 9
48 56.67 precipitation 0.1 270 < th dose dependent rect. 20 9
64 57.14 wind 9.0 270 < th dose independent rect. 10 17
65 57.15 precipitation 0.1 270 < th dose independent rect. 3 7
66 57.15 precipitation 0.1 270 < th dose dependent rect. 3 7
71 57.20 atmosphere 995.0 270 > th dose independent rect. 9 7
75 57.51 precipitation 0.1 270 < th dose independent rect. 16 17
76 57.51 precipitation 0.1 270 < th dose dependent rect. 16 17
79 57.65 temperature 10.0 270 > th dose dependent rect. 20 9
82 57.69 atmosphere 995.0 270 > th dose independent rect. 5 15
91 57.96 radiation 40.0 270 < th dose independent rect. 15 7
92 57.96 precipitation 0.1 270 < th dose independent rect. 22 17
93 57.96 precipitation 0.1 270 < th dose dependent rect. 22 17
99 58.23 temperature 10.0 270 > th dose independent rect. 15 7
100 58.23 temperature 10.0 270 > th dose independent rect. 22 17
101 58.27 wind 9.0 270 < th dose independent rect. 15 7
103 58.32 atmosphere 995.0 270 > th dose independent rect. 15 7
104 58.36 wind 9.0 270 < th dose independent rect. 22 17
106 58.47 wind 7.0 270 < th dose independent rect. 21 7
110 58.66 temperature 10.0 270 > th dose independent rect. 21 7
111 58.66 temperature 30.0 270 < th dose independent rect. 21 7
112 58.66 humidity 50.0 270 > th dose independent rect. 21 7
115 58.66 atmosphere 995.0 270 > th dose independent rect. 21 7
116 58.66 radiation 1.0 270 < th dose independent rect. 21 7
121 58.66 precipitation 0.1 270 < th dose independent rect. 21 7
123 58.66 temperature 10.0 270 > th dose independent rect. 4 17
124 58.66 radiation 1.0 270 < th dose dependent rect. 21 7
129 58.66 precipitation 0.1 270 < th dose dependent rect. 21 7
152 58.91 humidity 90.0 270 < th dose independent rect. 10 5
153 58.97 temperature 30.0 270 < th dose independent rect. 3 7
154 59.00 temperature 20.0 270 > th dose independent rect. 15 6
159 59.10 humidity 90.0 270 < th dose independent rect. 9 7
163 59.19 radiation 40.0 270 < th dose independent rect. 3 7
166 59.29 wind 1.0 270 > th dose independent rect. 15 7
169 59.44 atmosphere 995.0 270 > th dose independent rect. 22 17
193 59.83 humidity 50.0 270 > th dose independent rect. 16 17
210 60.18 precipitation 0.1 270 < th dose independent rect. 5 15
211 60.18 precipitation 0.1 270 < th dose dependent rect. 5 15
223 60.38 atmosphere 1015.0 270 < th dose independent rect. 22 17
224 60.40 radiation 40.0 270 < th dose dependent rect. 16 17
255 60.54 atmosphere 1015.0 270 < th dose independent rect. 15 7
293 60.92 precipitation 0.1 270 < th dose independent rect. 15 7
294 60.92 precipitation 0.1 270 < th dose dependent rect. 15 7
304 61.12 humidity 50.0 270 > th dose independent rect. 9 7
335 61.45 radiation 1.0 270 < th dose dependent sin 11 NA
354 61.68 precipitation 0.1 270 < th dose independent rect. 4 17
355 61.68 temperature 10.0 90 > th dose dependent rect. 23 6
356 61.68 precipitation 0.1 270 < th dose dependent rect. 4 17
365 61.77 temperature 10.0 270 > th dose dependent rect. 16 5
398 61.99 wind 1.0 270 > th dose independent rect. 10 17
400 62.01 atmosphere 1015.0 270 < th dose independent rect. 23 15
403 62.06 temperature 10.0 270 > th dose dependent rect. 15 7
447 62.49 atmosphere 1015.0 270 < th dose independent rect. 16 17
453 62.55 wind 9.0 270 < th dose dependent rect. 20 8
523 63.17 wind 1.0 270 > th dose independent rect. 21 7
525 63.19 wind 9.0 270 < th dose dependent rect. 3 7
535 63.28 radiation 1.0 270 > th dose independent rect. 16 17
538 63.31 radiation 40.0 90 < th dose dependent rect. 16 7
542 63.38 humidity 50.0 270 > th dose independent rect. 22 17
555 63.51 wind 9.0 270 < th dose dependent rect. 10 5
575 63.64 humidity 50.0 270 > th dose dependent rect. 3 7
602 63.70 atmosphere 1015.0 270 < th dose independent rect. 21 7
647 63.95 atmosphere 995.0 270 > th dose independent rect. 10 17
667 64.16 wind 7.0 90 < th dose independent rect. 23 6
675 64.20 precipitation 0.1 90 < th dose independent rect. 23 6
676 64.20 precipitation 0.1 90 < th dose dependent rect. 23 6
680 64.27 radiation 1.0 90 < th dose independent rect. 23 6
683 64.28 radiation 10.0 90 < th dose dependent rect. 23 6
691 64.32 temperature 10.0 90 > th dose independent rect. 23 6
692 64.32 temperature 30.0 90 < th dose independent rect. 23 6
693 64.32 humidity 50.0 90 > th dose independent rect. 23 6
696 64.32 atmosphere 995.0 90 > th dose independent rect. 23 6
704 64.37 wind 9.0 270 < th dose dependent rect. 4 5
716 64.49 humidity 50.0 270 > th dose independent rect. 10 17
760 64.75 atmosphere 995.0 270 > th dose dependent rect. 15 6
764 64.78 atmosphere 1015.0 270 < th dose independent rect. 10 17
771 64.86 wind 1.0 270 > th dose independent rect. 4 17
774 64.89 radiation 1.0 270 > th dose independent sin 11 NA
786 64.95 radiation 1.0 270 < th dose independent sin 11 NA
819 65.11 radiation 40.0 270 < th dose independent rect. 4 17
831 65.13 wind 9.0 10 < th dose independent rect. 10 8
863 65.27 wind 1.0 270 > th dose independent rect. 3 7
891 65.40 radiation 40.0 270 < th dose dependent rect. 4 5
893 65.43 humidity 50.0 90 > th dose independent rect. 16 7
919 65.61 temperature 10.0 270 > th dose dependent rect. 10 5
980 65.91 wind 9.0 90 < th dose dependent rect. 23 6