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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0308700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.75 (0.028) R2 : 0.638
β1 : 1.47 (0.105) R2dD : 0.175 R2D : 0.107
β2 : 1.7 (0.0678) R2dC : 0.532 R2C : 0.419
β3 : -1.34 (0.12) R2dE : 0.127 R2E : -0.0707
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.2 (0.0633) R2dN8 : 0.0134 R2N8 : -0.028
σ : 0.516
deviance : 122.64
__
_____
C
peak time of C : 22.8
E
wheather : radiation
threshold : 1.02
memory length : 4243
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.12 0.491 3.76 1.19 1.67 -1.49 1.69 -1.72 0.17 22.9 1.031 4270 -- --
112.8 0.495 3.76 1.52 1.72 -1.33 1.56 -- 0.17 22.9 1.03 4239 -- --
119.35 0.509 3.75 1.21 1.49 -1.44 -- -1.38 0.202 22.9 1.02 4341 -- --
122.64 0.516 3.75 1.47 1.7 -1.34 -- -- 0.2 22.8 1.02 4243 -- --
180.09 0.628 3.75 1.18 -- -1 -- -1 -0.0148 -- 1.02 4341 -- --
147.7 0.57 3.79 1.21 1.53 -- 1.52 -- -0.0344 22.8 -- -- -- --
157.31 0.587 3.79 1.15 1.52 -- -- -- -0.0388 22.8 -- -- -- --
186.63 0.639 3.75 1.19 -- -1.01 -- -- -0.0104 -- 1.02 4341 -- --
166.01 0.6 3.7 -- 1.54 -1.11 -- -- 0.143 22.9 6.4 9956 -- --
300.22 0.81 3.75 1.18 -- -- -- -- -0.0296 -- -- -- -- --
191.98 0.648 3.82 -- 1.53 -- -- -- -0.166 22.8 -- -- -- --
224.1 0.7 3.78 -- -- -1 -- -- -0.143 -- 1.02 4341 -- --
336.81 0.857 3.78 -- -- -- -- -- -0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.48 humidity 90 14400 > th dose dependent rect. 6 1
2 104.20 radiation 40 14400 < th dose dependent rect. 18 8
11 104.71 atmosphere 1005 43200 > th dose independent rect. 17 2
12 104.74 atmosphere 1005 43200 < th dose independent rect. 17 2
13 104.76 radiation 10 1440 < th dose dependent rect. 18 12
24 104.92 radiation 10 1440 < th dose dependent rect. 22 8
45 105.13 radiation 1 14400 > th dose independent rect. 18 14
46 105.14 radiation 1 14400 > th dose independent rect. 18 20
52 105.22 radiation 1 14400 < th dose independent rect. 18 14
55 105.24 radiation 1 14400 < th dose independent rect. 18 20
56 105.25 radiation 30 14400 > th dose independent rect. 7 1
84 105.33 radiation 1 14400 > th dose independent rect. 18 12
89 105.41 radiation 10 1440 < th dose dependent rect. 5 1
102 105.59 radiation 1 14400 < th dose independent rect. 22 16
104 105.59 radiation 1 1440 > th dose dependent rect. 4 2
117 105.60 radiation 1 14400 < th dose independent rect. 5 9
118 105.60 radiation 1 14400 < th dose independent rect. 24 14
122 105.62 radiation 1 14400 > th dose independent rect. 5 9
139 105.65 radiation 1 14400 > th dose independent rect. 5 3
150 105.66 temperature 10 270 > th dose dependent rect. 13 16
154 105.68 radiation 1 14400 < th dose independent rect. 5 3
160 105.69 radiation 1 14400 < th dose independent rect. 18 12
177 105.71 radiation 1 14400 > th dose independent sin 8 NA
186 105.72 radiation 1 14400 < th dose independent sin 8 NA
222 105.80 radiation 1 14400 < th dose independent rect. 22 10
234 105.81 radiation 1 14400 < th dose independent rect. 24 8
254 105.82 radiation 20 4320 > th dose dependent rect. 16 16
276 105.86 radiation 10 14400 < th dose dependent rect. 18 2
342 106.00 radiation 30 14400 < th dose independent rect. 15 17
344 106.02 humidity 90 43200 > th dose independent rect. 9 1
368 106.12 atmosphere 1005 43200 < th dose independent rect. 11 8
370 106.13 humidity 90 14400 > th dose dependent rect. 23 3
377 106.22 atmosphere 1005 43200 > th dose independent rect. 11 8
402 106.27 humidity 90 43200 > th dose independent rect. 7 3
407 106.28 radiation 1 14400 < th dose independent rect. 18 9
419 106.32 radiation 1 14400 > th dose independent rect. 5 1
447 106.40 temperature 20 720 > th dose dependent sin 15 NA
448 106.41 radiation 1 14400 < th dose independent rect. 5 1
461 106.45 radiation 1 14400 < th dose independent rect. 18 2
466 106.46 humidity 80 43200 > th dose dependent rect. 9 2
479 106.51 radiation 1 4320 < th dose dependent rect. 18 16
485 106.53 radiation 1 4320 < th dose dependent rect. 18 14
486 106.54 humidity 90 14400 < th dose independent rect. 22 2
507 106.59 humidity 90 43200 < th dose independent rect. 7 3
508 106.59 radiation 1 14400 > th dose independent rect. 7 23
515 106.61 radiation 1 14400 > th dose independent no NA NA
519 106.61 radiation 1 14400 > th dose independent rect. 5 14
584 106.63 radiation 1 14400 > th dose independent rect. 9 23
586 106.64 radiation 1 14400 > th dose independent rect. 18 1
598 106.64 wind 3 43200 < th dose dependent rect. 3 1
599 106.64 radiation 1 4320 > th dose dependent rect. 17 15
620 106.66 radiation 1 14400 < th dose dependent rect. 18 23
644 106.74 humidity 90 14400 < th dose independent rect. 21 5
653 106.74 radiation 40 4320 < th dose dependent rect. 17 15
658 106.75 radiation 1 14400 < th dose independent rect. 5 20
668 106.76 radiation 1 14400 < th dose independent no NA NA
670 106.76 radiation 1 14400 < th dose independent rect. 24 20
691 106.77 radiation 1 14400 < th dose independent rect. 5 15
696 106.77 radiation 1 14400 < th dose independent rect. 5 18
727 106.78 radiation 1 14400 < th dose independent rect. 11 23
749 106.79 radiation 1 14400 < th dose independent rect. 9 23
757 106.81 wind 7 43200 > th dose independent rect. 10 1
766 106.83 humidity 90 43200 < th dose independent rect. 7 13
774 106.85 temperature 20 43200 > th dose independent rect. 19 1
776 106.85 humidity 90 43200 < th dose independent rect. 7 16
780 106.85 radiation 1 14400 < th dose independent rect. 7 23
781 106.86 humidity 90 43200 > th dose independent rect. 7 16
788 106.90 humidity 90 43200 > th dose independent rect. 7 7
789 106.90 humidity 90 43200 < th dose independent rect. 7 7
793 106.92 wind 7 43200 < th dose independent rect. 10 1
801 106.94 temperature 20 43200 < th dose independent rect. 19 1
816 106.95 humidity 90 43200 > th dose independent rect. 7 14
834 106.99 wind 3 43200 > th dose dependent rect. 10 2
839 107.00 humidity 90 14400 > th dose dependent rect. 23 17
869 107.06 temperature 20 720 > th dose dependent rect. 14 14
879 107.08 humidity 80 43200 > th dose dependent rect. 8 10
912 107.11 humidity 80 43200 > th dose dependent rect. 9 5
967 107.18 radiation 40 4320 < th dose dependent rect. 5 3
969 107.19 humidity 90 43200 > th dose independent sin 22 NA
998 107.24 humidity 90 43200 < th dose independent sin 21 NA