Os03g0308500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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Os03g0308500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.72 | 0.203 | 10.8 | 1.47 | 0.159 | -0.882 | -0.3 | 2.24 | 0.375 | 2.33 | 21.2 | 1143 | -- | -- |
| 24.03 | 0.23 | 10.9 | 0.84 | 0.317 | -1.18 | 0.273 | -- | 0.21 | 13.6 | 14.7 | 5467 | -- | -- |
| 18.96 | 0.203 | 10.8 | 1.5 | 0.158 | -0.9 | -- | 2.3 | 0.385 | 2.28 | 21.81 | 1160 | -- | -- |
| 21.89 | 0.218 | 10.9 | 0.906 | 0.178 | -1.05 | -- | -- | 0.225 | 0.576 | 14.41 | 955 | -- | -- |
| 19.98 | 0.208 | 10.8 | 1.57 | -- | -0.801 | -- | 2.31 | 0.404 | -- | 21.6 | 1483 | -- | -- |
| 37.47 | 0.287 | 10.9 | 0.619 | 0.0736 | -- | -0.212 | -- | 0.0437 | 5.9 | -- | -- | -- | -- |
| 37.56 | 0.287 | 10.9 | 0.618 | 0.0741 | -- | -- | -- | 0.0448 | 6.69 | -- | -- | -- | -- |
| 23.1 | 0.224 | 10.9 | 0.921 | -- | -0.943 | -- | -- | 0.219 | -- | 12.14 | 1657 | -- | -- |
| 40.91 | 0.298 | 10.9 | -- | 0.11 | -0.664 | -- | -- | 0.0609 | 0.254 | 12.65 | 842 | -- | -- |
| 37.85 | 0.287 | 10.9 | 0.62 | -- | -- | -- | -- | 0.0462 | -- | -- | -- | -- | -- |
| 47.64 | 0.323 | 10.9 | -- | 0.0823 | -- | -- | -- | -0.0241 | 6.24 | -- | -- | -- | -- |
| 40.7 | 0.297 | 10.9 | -- | -- | -0.476 | -- | -- | 0.052 | -- | 21.8 | 956 | -- | -- |
| 47.99 | 0.323 | 11 | -- | -- | -- | -- | -- | -0.0225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 17 | 19.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 22 | 19.16 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 133 | 19.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 154 | 19.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 193 | 19.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 231 | 19.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 232 | 19.74 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 283 | 19.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 513 | 20.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 881 | 20.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 929 | 20.41 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 9 |