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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0308000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ubiquitin-conjugating enzyme, E2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0279) R2 : 0.00419
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0813 (0.0587) R2dN8 : 0.00541 R2N8 : 0.00419
σ : 0.525
deviance : 126.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
99.04 0.468 10.8 -0.317 0.324 0.96 -0.332 1.87 -0.012 1.76 25.18 234 -- --
102.11 0.474 10.8 -0.00907 0.161 0.881 -0.033 -- 0.0607 2.27 29.5 138 -- --
99.33 0.464 10.8 -0.289 0.353 0.973 -- 1.83 -0.00778 1.54 24.8 288 -- --
102.11 0.474 10.8 -0.00857 0.16 0.882 -- -- 0.0598 2.2 29.64 113 -- --
102.98 0.473 10.8 -0.147 -- 1.22 -- 1.2 0.0178 -- 44.14 9 -- --
112.79 0.498 10.8 -0.216 0.458 -- 0.0765 -- -0.114 2.16 -- -- -- --
112.81 0.497 10.8 -0.219 0.459 -- -- -- -0.114 2.17 -- -- -- --
103.11 0.475 10.8 0.032 -- 1.04 -- -- 0.0927 -- 29.71 32 -- --
102.11 0.473 10.8 -- 0.159 0.885 -- -- 0.0616 2.21 29.6 106 -- --
125.37 0.523 10.8 -0.199 -- -- -- -- -0.103 -- -- -- -- --
114.07 0.5 10.8 -- 0.454 -- -- -- -0.09 2.16 -- -- -- --
103.13 0.475 10.8 -- -- 1.03 -- -- 0.0858 -- 29.93 67 -- --
126.42 0.525 10.8 -- -- -- -- -- -0.0813 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 98.09 radiation 1 10 < th dose independent rect. 5 1
3 98.25 temperature 30 10 < th dose dependent rect. 3 23
5 98.86 temperature 25 270 < th dose dependent rect. 24 23
7 98.98 temperature 25 270 < th dose dependent rect. 8 23
9 99.00 temperature 25 270 < th dose dependent rect. 11 23
17 99.12 temperature 25 270 < th dose dependent no NA NA
28 99.31 temperature 25 270 < th dose dependent rect. 15 23
38 99.48 temperature 25 720 < th dose dependent rect. 5 19
39 99.50 temperature 30 10 < th dose dependent rect. 13 23
41 99.56 temperature 30 10 < th dose dependent rect. 15 23
52 99.64 temperature 30 10 < th dose dependent no NA NA
55 99.64 temperature 30 10 < th dose dependent rect. 11 23
64 99.72 temperature 30 10 < th dose dependent rect. 19 23
87 99.92 temperature 30 10 < th dose dependent rect. 17 23
89 99.94 temperature 25 1440 < th dose dependent rect. 18 4
94 99.96 temperature 25 720 < th dose dependent sin 18 NA
96 99.96 temperature 30 30 < th dose dependent rect. 9 23
102 99.99 temperature 30 10 < th dose dependent rect. 21 23
111 100.06 temperature 25 1440 < th dose dependent rect. 17 8
116 100.08 temperature 15 270 > th dose dependent sin 10 NA
119 100.12 temperature 25 1440 < th dose dependent rect. 21 1
205 100.39 temperature 30 10 < th dose dependent rect. 23 23
290 100.67 temperature 30 30 < th dose dependent rect. 7 23
340 100.78 temperature 20 1440 > th dose dependent rect. 2 1
386 100.87 temperature 20 10 > th dose dependent rect. 5 23
396 100.90 temperature 20 1440 > th dose dependent rect. 21 6
416 100.94 temperature 30 10 < th dose dependent rect. 3 21
491 101.11 temperature 15 10 > th dose dependent no NA NA
576 101.23 temperature 25 1440 < th dose dependent rect. 16 20
655 101.32 temperature 15 270 > th dose dependent rect. 16 23
709 101.38 temperature 25 270 < th dose dependent sin 11 NA
713 101.38 temperature 20 720 > th dose dependent rect. 17 17
719 101.39 temperature 15 10 > th dose dependent rect. 23 23
724 101.40 temperature 25 1440 < th dose dependent no NA NA
750 101.44 temperature 10 1440 > th dose dependent rect. 20 7
759 101.45 temperature 10 1440 > th dose dependent rect. 21 4
778 101.47 temperature 10 1440 > th dose dependent rect. 21 1
832 101.51 temperature 25 1440 < th dose dependent rect. 20 23
926 101.60 temperature 20 1440 > th dose dependent sin 11 NA
928 101.60 temperature 20 270 > th dose dependent rect. 21 12