Os03g0307900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0307900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 260.72 | 0.759 | 4.8 | 0.459 | 1.48 | 2.73 | -0.481 | 1.43 | -0.223 | 18.4 | 20.56 | 109 | -- | -- |
| 262.55 | 0.755 | 4.81 | 0.278 | 1.46 | 2.82 | -0.45 | -- | -0.259 | 18.4 | 20.92 | 112 | -- | -- |
| 261.24 | 0.753 | 4.8 | 0.427 | 1.47 | 2.73 | -- | 1.22 | -0.236 | 18.4 | 20.6 | 108 | -- | -- |
| 262.42 | 0.754 | 4.82 | 0.234 | 1.46 | 2.8 | -- | -- | -0.288 | 18.4 | 20.98 | 108 | -- | -- |
| 327.59 | 0.843 | 4.83 | -0.0411 | -- | 3.66 | -- | -0.779 | -0.428 | -- | 22.65 | 252 | -- | -- |
| 390.17 | 0.926 | 4.73 | 0.831 | 2.35 | -- | 0.554 | -- | 0.175 | 17.2 | -- | -- | -- | -- |
| 390.94 | 0.926 | 4.73 | 0.831 | 2.35 | -- | -- | -- | 0.178 | 17.2 | -- | -- | -- | -- |
| 327.96 | 0.843 | 4.81 | 0.0569 | -- | 3.58 | -- | -- | -0.386 | -- | 22.63 | 252 | -- | -- |
| 263.56 | 0.756 | 4.83 | -- | 1.43 | 2.88 | -- | -- | -0.328 | 18.5 | 20.92 | 109 | -- | -- |
| 680.54 | 1.22 | 4.7 | 0.748 | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
| 409.13 | 0.946 | 4.75 | -- | 2.34 | -- | -- | -- | 0.0851 | 17.2 | -- | -- | -- | -- |
| 328.04 | 0.844 | 4.82 | -- | -- | 3.6 | -- | -- | -0.395 | -- | 22.61 | 252 | -- | -- |
| 695.3 | 1.23 | 4.72 | -- | -- | -- | -- | -- | 0.0353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 254.25 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 3 | 257.75 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 5 | 257.91 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 6 | 258.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 10 | 259.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 19 | 260.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 24 | 261.50 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 33 | 262.86 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 37 | 263.23 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 54 | 265.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 60 | 266.00 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 78 | 267.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 101 | 268.49 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 158 | 271.37 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 180 | 273.00 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 196 | 273.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 253 | 275.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 263 | 275.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 368 | 279.06 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 371 | 279.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 382 | 279.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 386 | 279.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 399 | 279.60 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 413 | 279.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 483 | 281.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 529 | 282.12 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 531 | 282.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 563 | 282.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 564 | 282.80 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 605 | 283.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 643 | 283.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 753 | 284.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 782 | 284.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 830 | 285.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 863 | 285.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 931 | 285.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 961 | 286.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |