Os03g0307700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF231, plant domain containing protein.
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Os03g0307700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF231, plant domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 275.25 | 0.779 | 5.09 | -0.928 | 0.15 | -0.932 | 1.63 | -0.306 | -0.688 | 7.08 | 1001 | 3659 | -- | -- |
| 275.33 | 0.773 | 5.09 | -0.932 | 0.153 | -0.962 | 1.66 | -- | -0.686 | 7.03 | 1001 | 3625 | -- | -- |
| 278.86 | 0.778 | 5.1 | -0.911 | 0.298 | -0.962 | -- | -0.195 | -0.699 | 3.51 | 1000 | 3581 | -- | -- |
| 278.85 | 0.778 | 5.1 | -0.914 | 0.29 | -0.971 | -- | -- | -0.696 | 3.43 | 1001 | 3656 | -- | -- |
| 283.52 | 0.784 | 5.1 | -0.903 | -- | -0.911 | -- | -0.3 | -0.696 | -- | 1001 | 3658 | -- | -- |
| 294.56 | 0.805 | 5.11 | -0.806 | 0.152 | -- | 1.59 | -- | -0.766 | 6.96 | -- | -- | -- | -- |
| 297.86 | 0.808 | 5.12 | -0.785 | 0.284 | -- | -- | -- | -0.775 | 3.38 | -- | -- | -- | -- |
| 283.58 | 0.784 | 5.1 | -0.901 | -- | -0.958 | -- | -- | -0.688 | -- | 1001 | 3658 | -- | -- |
| 300.15 | 0.807 | 5.08 | -- | 0.274 | -0.808 | -- | -- | -0.609 | 3.44 | 1001 | 3586 | -- | -- |
| 302.41 | 0.813 | 5.12 | -0.773 | -- | -- | -- | -- | -0.767 | -- | -- | -- | -- | -- |
| 314.1 | 0.829 | 5.1 | -- | 0.269 | -- | -- | -- | -0.687 | 3.39 | -- | -- | -- | -- |
| 304.29 | 0.812 | 5.08 | -- | -- | -0.81 | -- | -- | -0.604 | -- | 1001 | 3653 | -- | -- |
| 318.17 | 0.833 | 5.1 | -- | -- | -- | -- | -- | -0.682 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 270.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 6 |
| 2 | 270.54 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 8 | 271.69 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 19 |
| 13 | 271.88 | temperature | 20.0 | 720 | > th | dose independent | sin | 8 | NA |
| 17 | 272.01 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 17 |
| 24 | 272.22 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 29 | 272.54 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 13 |
| 32 | 272.61 | temperature | 20.0 | 30 | > th | dose independent | rect. | 1 | 17 |
| 51 | 273.18 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 59 | 273.29 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 66 | 273.37 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 86 | 273.75 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 87 | 273.78 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 96 | 273.98 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 98 | 274.04 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 104 | 274.13 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 120 | 274.20 | temperature | 20.0 | 30 | > th | dose independent | rect. | 4 | 14 |
| 125 | 274.25 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 132 | 274.28 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 140 | 274.31 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 154 | 274.42 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 158 | 274.45 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 187 | 274.64 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 188 | 274.65 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 200 | 274.72 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 232 | 274.92 | wind | 9.0 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 261 | 275.02 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 275 | 275.09 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 284 | 275.11 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 12 | 15 |
| 310 | 275.22 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 322 | 275.24 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 368 | 275.43 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 378 | 275.47 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 16 | 12 |
| 408 | 275.58 | wind | 9.0 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 410 | 275.59 | atmosphere | 1000.0 | 4320 | > th | dose independent | sin | 19 | NA |
| 421 | 275.62 | atmosphere | 1000.0 | 4320 | < th | dose independent | sin | 19 | NA |
| 439 | 275.65 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 457 | 275.66 | atmosphere | 1000.0 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 542 | 275.91 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 592 | 276.07 | wind | 9.0 | 4320 | < th | dose independent | rect. | 16 | 11 |
| 634 | 276.17 | temperature | 15.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 692 | 276.27 | atmosphere | 1000.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 694 | 276.27 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 699 | 276.29 | atmosphere | 1000.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 707 | 276.30 | wind | 9.0 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 772 | 276.41 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 12 | 2 |
| 793 | 276.45 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 797 | 276.45 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 812 | 276.48 | wind | 5.0 | 30 | < th | dose independent | rect. | 16 | 9 |
| 828 | 276.50 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 871 | 276.56 | atmosphere | 1000.0 | 4320 | < th | dose dependent | sin | 19 | NA |
| 901 | 276.60 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 949 | 276.69 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 2 |