Os03g0307500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0307500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.7 | 0.612 | 3.68 | 0.405 | 0.204 | 1.61 | 0.448 | -3.33 | 0.158 | 10.5 | 24.96 | 687 | -- | -- |
| 183.28 | 0.631 | 3.76 | -0.132 | 0.315 | 2.02 | 0.12 | -- | -0.0294 | 8.94 | 23.09 | 940 | -- | -- |
| 170.08 | 0.607 | 3.69 | 0.362 | 0.248 | 1.59 | -- | -3.16 | 0.148 | 11.6 | 24.9 | 594 | -- | -- |
| 180.1 | 0.625 | 3.76 | -0.0929 | 0.263 | 2.28 | -- | -- | 0.0016 | 11.7 | 22.82 | 590 | -- | -- |
| 172.34 | 0.611 | 3.68 | 0.432 | -- | 1.75 | -- | -3.12 | 0.196 | -- | 25.7 | 688 | -- | -- |
| 237.36 | 0.722 | 3.83 | -0.672 | 0.432 | -- | -0.315 | -- | -0.351 | 10.6 | -- | -- | -- | -- |
| 237.76 | 0.722 | 3.83 | -0.685 | 0.434 | -- | -- | -- | -0.352 | 10.5 | -- | -- | -- | -- |
| 183.06 | 0.63 | 3.76 | -0.107 | -- | 2.26 | -- | -- | -0.00137 | -- | 22.97 | 695 | -- | -- |
| 180.4 | 0.626 | 3.76 | -- | 0.251 | 2.25 | -- | -- | 0.00231 | 11.8 | 22.87 | 591 | -- | -- |
| 249.34 | 0.738 | 3.84 | -0.693 | -- | -- | -- | -- | -0.354 | -- | -- | -- | -- | -- |
| 250.13 | 0.74 | 3.81 | -- | 0.439 | -- | -- | -- | -0.275 | 10.7 | -- | -- | -- | -- |
| 183.33 | 0.631 | 3.76 | -- | -- | 2.31 | -- | -- | 0.0159 | -- | 22.93 | 702 | -- | -- |
| 262.01 | 0.756 | 3.82 | -- | -- | -- | -- | -- | -0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 2 | 162.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 9 | 163.89 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 14 | 164.10 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 35 | 165.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 50 | 165.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 2 |
| 60 | 166.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 87 | 166.74 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 118 | 167.38 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 130 | 167.63 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 199 | 168.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 206 | 168.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 260 | 168.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 265 | 168.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 22 |
| 304 | 169.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 306 | 169.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 418 | 169.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 485 | 169.87 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 525 | 170.10 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 549 | 170.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 554 | 170.24 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 632 | 170.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 23 |
| 645 | 170.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 660 | 170.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 667 | 170.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 679 | 170.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 23 |
| 915 | 171.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 956 | 171.92 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |