Os03g0307200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nicotianamine synthase 2 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 2) (OsNAS2).
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Os03g0307200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nicotianamine synthase 2 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 2) (OsNAS2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 438.23 | 0.984 | 5.3 | 0.983 | 1.34 | -4.32 | 0.319 | 0.441 | -0.227 | 12.1 | 16.6 | 98 | -- | -- |
| 438.38 | 0.975 | 5.31 | 0.922 | 1.35 | -4.31 | 0.384 | -- | -0.235 | 12 | 16.69 | 96 | -- | -- |
| 438.49 | 0.975 | 5.29 | 1.02 | 1.34 | -4.26 | -- | 0.707 | -0.207 | 12.1 | 16.93 | 98 | -- | -- |
| 439.08 | 0.976 | 5.31 | 0.921 | 1.34 | -4.26 | -- | -- | -0.246 | 12.1 | 16.81 | 97 | -- | -- |
| 470.55 | 1.01 | 5.32 | 0.939 | -- | -3.71 | -- | 0.389 | -0.259 | -- | 16.9 | 500 | -- | -- |
| 659.14 | 1.2 | 5.45 | -0.0527 | 1.08 | -- | 1.01 | -- | -0.913 | 7.45 | -- | -- | -- | -- |
| 661.95 | 1.2 | 5.45 | -0.0285 | 1.07 | -- | -- | -- | -0.915 | 7.52 | -- | -- | -- | -- |
| 470.39 | 1.01 | 5.35 | 0.862 | -- | -3.65 | -- | -- | -0.316 | -- | 16.81 | 507 | -- | -- |
| 459.48 | 0.998 | 5.32 | -- | 1.39 | -3.67 | -- | -- | -0.252 | 11.9 | 19 | 69 | -- | -- |
| 723.79 | 1.26 | 5.48 | -0.0125 | -- | -- | -- | -- | -0.898 | -- | -- | -- | -- | -- |
| 661.97 | 1.2 | 5.45 | -- | 1.07 | -- | -- | -- | -0.911 | 7.52 | -- | -- | -- | -- |
| 488.09 | 1.03 | 5.38 | -- | -- | -3.26 | -- | -- | -0.448 | -- | 17.71 | 492 | -- | -- |
| 723.79 | 1.26 | 5.48 | -- | -- | -- | -- | -- | -0.896 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 433.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 2 | 436.47 | temperature | 30 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 5 | 439.50 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 7 | 441.17 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 8 | 441.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 13 | 443.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 18 | 444.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 21 | 445.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 20 |
| 23 | 445.70 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 27 | 446.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 30 | 447.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 42 | 449.16 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 47 | 449.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 68 | 452.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 71 | 452.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 74 | 452.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 144 | 458.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 170 | 460.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 173 | 460.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 210 | 462.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 8 |
| 217 | 463.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 6 |
| 227 | 463.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 6 |
| 270 | 465.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 276 | 465.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 324 | 466.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 427 | 469.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 434 | 469.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 508 | 471.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 715 | 475.44 | temperature | 15 | 1440 | > th | dose dependent | sin | 7 | NA |
| 774 | 476.31 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |