Os03g0306900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TENA/THI-4 protein domain containing protein.
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Os03g0306900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TENA/THI-4 protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.79 | 0.401 | 9.12 | 0.432 | 0.919 | 0.854 | 0.465 | -1.23 | 0.016 | 13.6 | 10.01 | 1311 | -- | -- |
| 74.97 | 0.403 | 9.11 | 0.595 | 0.947 | 0.866 | 0.83 | -- | 0.026 | 13.1 | 10 | 1244 | -- | -- |
| 73.11 | 0.398 | 9.12 | 0.423 | 0.944 | 0.884 | -- | -1.24 | 0.0161 | 13.6 | 10.01 | 1252 | -- | -- |
| 76.93 | 0.409 | 9.1 | 0.611 | 0.96 | 0.925 | -- | -- | 0.0282 | 13.5 | 10.01 | 1270 | -- | -- |
| 98.88 | 0.463 | 9.12 | 0.618 | -- | 0.919 | -- | -0.974 | 0.0461 | -- | 10 | 1773 | -- | -- |
| 92.6 | 0.451 | 9.04 | 0.858 | 0.788 | -- | 0.408 | -- | 0.314 | 14.1 | -- | -- | -- | -- |
| 93.17 | 0.452 | 9.04 | 0.87 | 0.792 | -- | -- | -- | 0.317 | 14.3 | -- | -- | -- | -- |
| 80.99 | 0.419 | 9.03 | 0.9 | -- | 1.29 | -- | -- | 0.271 | -- | 2.095 | 1809 | -- | -- |
| 86.86 | 0.434 | 9.1 | -- | 0.971 | 1.01 | -- | -- | 0.0269 | 13.4 | 10 | 1274 | -- | -- |
| 130.42 | 0.534 | 9.04 | 0.837 | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
| 113.14 | 0.498 | 9.06 | -- | 0.776 | -- | -- | -- | 0.22 | 14.3 | -- | -- | -- | -- |
| 91.81 | 0.446 | 9.04 | -- | -- | 1.66 | -- | -- | 0.126 | -- | 1.869 | 1751 | -- | -- |
| 148.9 | 0.57 | 9.07 | -- | -- | -- | -- | -- | 0.205 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 10 | 72.48 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 13 | 72.72 | radiation | 10 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 29 | 73.11 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 32 | 73.27 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 66 | 73.50 | radiation | 10 | 1440 | > th | dose independent | sin | 23 | NA |
| 82 | 73.57 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 89 | 73.60 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 94 | 73.62 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 116 | 73.92 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 137 | 74.11 | humidity | 90 | 720 | < th | dose independent | rect. | 7 | 17 |
| 139 | 74.17 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 3 |
| 167 | 74.53 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 168 | 74.54 | wind | 7 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 199 | 74.63 | radiation | 10 | 1440 | < th | dose dependent | sin | 20 | NA |
| 215 | 74.67 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 284 | 74.69 | wind | 5 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 288 | 74.73 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 289 | 74.73 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 295 | 74.77 | humidity | 70 | 720 | > th | dose dependent | rect. | 9 | 21 |
| 298 | 74.81 | humidity | 90 | 720 | < th | dose independent | sin | 21 | NA |
| 301 | 74.83 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 7 |
| 304 | 74.83 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 305 | 74.84 | wind | 7 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 318 | 74.87 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 19 |
| 329 | 74.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 350 | 75.04 | humidity | 60 | 720 | > th | dose dependent | sin | 15 | NA |
| 354 | 75.05 | humidity | 70 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 358 | 75.08 | humidity | 90 | 720 | > th | dose dependent | sin | 19 | NA |
| 364 | 75.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 375 | 75.13 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 404 | 75.20 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 2 |
| 414 | 75.22 | humidity | 60 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 423 | 75.25 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 434 | 75.28 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 9 |
| 446 | 75.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 467 | 75.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 12 | 23 |
| 471 | 75.33 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 486 | 75.35 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 504 | 75.38 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 508 | 75.39 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 512 | 75.40 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 21 |
| 538 | 75.46 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 573 | 75.54 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 583 | 75.57 | humidity | 80 | 1440 | > th | dose independent | rect. | 3 | 16 |
| 599 | 75.60 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 615 | 75.63 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 672 | 75.72 | humidity | 70 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 681 | 75.73 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 698 | 75.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 12 |
| 701 | 75.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 12 |
| 704 | 75.76 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 717 | 75.78 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 721 | 75.78 | humidity | 70 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 731 | 75.79 | humidity | 70 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 755 | 75.82 | humidity | 70 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 762 | 75.83 | humidity | 70 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 763 | 75.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 879 | 75.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 886 | 76.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 945 | 76.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 3 |