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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0306700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Eukaryotic transcription factor, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.11 (0.0587) R2 : 0.711
β1 : 3.41 (0.212) R2dD : 0.2 R2D : 0.159
β2 : 2.72 (0.141) R2dC : 0.244 R2C : 0.286
β3 : -2.99 (0.198) R2dE : 0.187 R2E : 0.169
β4 : 2.18 (0.532) R2dD*C : 0.0133 R2D*C : -0.011
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.64 (0.134) R2dN8 : 0.142 R2N8 : -0.0676
σ : 1.08
deviance : 532.8
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_____
C
peak time of C : 13.2
E
wheather : radiation
threshold : 2.077
memory length : 12664
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 7.95
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
519.49 1.07 4.14 2.79 2.87 -3.11 2.21 -4.65 1.39 13.1 1.044 9936 7.94 --
532.8 1.08 4.11 3.41 2.72 -2.99 2.18 -- 1.64 13.2 2.077 12664 7.95 --
533.98 1.08 4.13 2.76 2.72 -3.11 -- -4.76 1.41 13.1 1.155 9895 8.57 --
552.31 1.09 4.11 3.79 2.63 -3.05 -- -- 1.6 13.1 2.07 12660 8.75 --
798.67 1.32 4.31 3.77 -- -3.14 -- -3.16 0.737 -- -0.008014 10406 7.59 --
796.4 1.32 4.26 3.89 3.15 -- 2.6 -- 0.829 13.1 -- -- -- --
824.5 1.34 4.25 3.98 3.15 -- -- -- 0.843 13.1 -- -- -- --
824.5 1.34 4.29 3.98 -- -3.15 -- -- 0.843 -- -0.0066 10407 7.58 --
807.68 1.32 4.11 -- 2.98 -3.75 -- -- 1.48 13 5.14 25845 8.98 --
1439.36 1.77 4.3 3.86 -- -- -- -- 0.78 -- -- -- -- --
1241.37 1.65 4.35 -- 3.08 -- -- -- 0.4 13.1 -- -- -- --
1133.61 1.57 4.06 -- -- -4.41 -- -- 1.64 -- 4.165 9788 9.94 --
1831.68 2 4.4 -- -- -- -- -- 0.352 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 518.15 humidity 70 43200 > th dose dependent rect. 17 2
3 520.47 humidity 80 43200 > th dose dependent rect. 17 5
6 521.71 radiation 1 14400 > th dose independent rect. 5 1
7 521.74 radiation 1 14400 < th dose independent rect. 5 1
9 522.39 radiation 1 14400 < th dose independent rect. 24 6
12 522.64 radiation 1 14400 < th dose independent rect. 2 4
17 522.71 radiation 1 14400 > th dose independent rect. 16 14
34 523.26 radiation 1 14400 < th dose independent rect. 16 2
37 523.46 radiation 1 14400 < th dose independent rect. 24 18
40 523.50 radiation 1 14400 < th dose independent rect. 16 15
41 523.51 radiation 1 14400 < th dose independent rect. 4 14
42 523.51 radiation 1 14400 < th dose independent rect. 2 16
54 524.02 radiation 1 14400 > th dose independent rect. 16 2
57 524.21 humidity 80 43200 < th dose independent rect. 18 1
58 524.23 radiation 1 14400 > th dose independent sin 12 NA
63 524.42 radiation 1 14400 > th dose independent rect. 4 14
85 524.80 radiation 1 14400 < th dose independent sin 11 NA
91 524.94 radiation 1 14400 > th dose independent rect. 16 21
98 525.04 radiation 1 14400 > th dose independent rect. 9 21
112 525.20 radiation 1 14400 < th dose independent rect. 16 21
157 525.54 radiation 1 14400 < th dose independent rect. 9 22
170 525.67 humidity 90 43200 > th dose dependent rect. 6 17
199 525.95 humidity 90 43200 < th dose independent rect. 10 13
220 526.19 radiation 1 14400 > th dose independent no NA NA
283 526.24 radiation 1 14400 < th dose independent rect. 4 23
287 526.25 radiation 1 14400 < th dose independent rect. 4 21
288 526.25 radiation 1 14400 < th dose independent rect. 2 23
291 526.26 radiation 1 14400 < th dose independent no NA NA
334 526.55 humidity 90 43200 > th dose dependent rect. 9 14
354 526.84 humidity 90 43200 < th dose independent rect. 7 16
391 527.46 humidity 90 43200 < th dose independent rect. 4 19
392 527.47 radiation 1 14400 < th dose independent rect. 7 11
398 527.74 radiation 1 14400 < th dose independent sin 1 NA
399 527.75 humidity 90 43200 > th dose independent rect. 6 17
400 527.79 radiation 1 14400 < th dose independent rect. 9 9
405 527.81 humidity 90 43200 > th dose independent rect. 9 14
422 528.04 radiation 1 14400 > th dose independent sin 1 NA
429 528.13 humidity 90 43200 < th dose independent sin 21 NA
430 528.14 temperature 25 43200 < th dose dependent rect. 17 1
454 528.28 humidity 90 43200 < th dose independent rect. 15 7
457 528.29 humidity 90 43200 > th dose dependent sin 21 NA
459 528.30 temperature 10 43200 > th dose dependent rect. 17 1
481 528.49 radiation 1 14400 > th dose independent rect. 7 11
497 528.77 radiation 1 14400 > th dose independent rect. 9 9
554 529.33 humidity 90 43200 > th dose independent sin 22 NA
579 529.54 radiation 1 14400 < th dose independent rect. 16 11
582 529.55 radiation 1 14400 < th dose independent rect. 16 9
724 530.43 radiation 1 14400 > th dose independent rect. 4 10
769 530.60 radiation 1 14400 < th dose independent rect. 24 14
785 530.68 radiation 1 14400 < th dose independent rect. 4 10
786 530.69 radiation 1 14400 < th dose independent rect. 2 12
789 530.70 radiation 1 14400 < th dose independent rect. 20 18