Os03g0306200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1).
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Os03g0306200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.23 | 0.25 | 9.46 | 1.09 | 0.351 | -0.348 | -0.301 | 2.67 | 0.511 | 5.18 | 20.3 | 1703 | -- | -- |
| 33.41 | 0.269 | 9.53 | 0.652 | 0.414 | -0.485 | -0.422 | -- | 0.447 | 5.24 | 12.19 | 18479 | -- | -- |
| 28.44 | 0.248 | 9.46 | 1.09 | 0.347 | -0.349 | -- | 2.7 | 0.513 | 5.2 | 20.37 | 1738 | -- | -- |
| 33.43 | 0.269 | 9.52 | 0.576 | 0.368 | -0.43 | -- | -- | 0.408 | 5.25 | 11.91 | 19910 | -- | -- |
| 34.53 | 0.274 | 9.45 | 1.22 | -- | -0.426 | -- | 3.02 | 0.56 | -- | 21.1 | 1787 | -- | -- |
| 35.59 | 0.28 | 9.56 | 0.237 | 0.373 | -- | -0.361 | -- | 0.247 | 5.28 | -- | -- | -- | -- |
| 35.91 | 0.281 | 9.56 | 0.237 | 0.37 | -- | -- | -- | 0.249 | 5.31 | -- | -- | -- | -- |
| 39.11 | 0.293 | 9.55 | 0.345 | -- | -0.524 | -- | -- | 0.328 | -- | 11.91 | 19910 | -- | -- |
| 36.75 | 0.284 | 9.57 | -- | 0.327 | -0.212 | -- | -- | 0.222 | 5.7 | 26.99 | 1881 | -- | -- |
| 43.07 | 0.307 | 9.57 | 0.25 | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
| 37.39 | 0.286 | 9.57 | -- | 0.374 | -- | -- | -- | 0.222 | 5.29 | -- | -- | -- | -- |
| 41.35 | 0.3 | 9.57 | -- | -- | -0.403 | -- | -- | 0.232 | -- | 26.5 | 1926 | -- | -- |
| 44.71 | 0.312 | 9.57 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 8 | 26.49 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 11 | 26.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 12 | 26.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 36 | 26.63 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 71 | 26.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 78 | 26.82 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 95 | 26.88 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 105 | 26.90 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 121 | 26.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 145 | 27.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 152 | 27.05 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 159 | 27.07 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 185 | 27.12 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 190 | 27.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 216 | 27.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 219 | 27.21 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 230 | 27.25 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 238 | 27.25 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 250 | 27.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 259 | 27.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 273 | 27.30 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 284 | 27.33 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 288 | 27.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 291 | 27.34 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 294 | 27.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 311 | 27.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 373 | 27.48 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 425 | 27.55 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 451 | 27.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 475 | 27.61 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 486 | 27.62 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 497 | 27.63 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 507 | 27.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 517 | 27.65 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 547 | 27.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 23 |
| 574 | 27.71 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 617 | 27.77 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 619 | 27.77 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 624 | 27.78 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 626 | 27.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 696 | 27.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 699 | 27.84 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 706 | 27.85 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 728 | 27.87 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 752 | 27.88 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 768 | 27.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 887 | 27.95 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 893 | 27.96 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 5 |
| 899 | 27.96 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 900 | 27.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 912 | 27.97 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 921 | 27.97 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 931 | 27.98 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 932 | 27.98 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 933 | 27.98 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 939 | 27.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 999 | 28.00 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |