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Os03g0305100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to AMP-binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0352) R2 : 0.475
β1 : 0.872 (0.131) R2dD : 0.0549 R2D : -0.0789
β2 : 0.918 (0.0886) R2dC : 0.131 R2C : -0.018
β3 : 1.55 (0.108) R2dE : 0.259 R2E : 0.0506
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.04 (0.0755) R2dN8 : 0.297 R2N8 : 0.148
σ : 0.657
deviance : 199.09
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C
peak time of C : 21.4
E
wheather : humidity
threshold : 69.82
memory length : 1204
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
194.96 0.656 13.7 0.699 0.863 1.41 1.03 1.36 1.07 20.8 71 1243 -- --
198.44 0.656 13.6 0.904 0.884 1.51 0.823 -- 1.13 20.9 70.24 1229 -- --
197.86 0.655 13.7 0.7 0.869 1.45 -- 1.13 1.08 21.3 70.09 1236 -- --
199.09 0.657 13.7 0.872 0.918 1.55 -- -- 1.04 21.4 69.82 1204 -- --
232.59 0.71 13.6 0.671 -- 1.36 -- 0.929 1.1 -- 71 1386 -- --
277.87 0.781 13.7 0.577 0.711 -- 1.74 -- 0.926 18.8 -- -- -- --
283.85 0.789 13.7 0.54 0.729 -- -- -- 0.927 19.8 -- -- -- --
234.35 0.713 13.6 0.822 -- 1.42 -- -- 1.14 -- 71.99 1400 -- --
217.47 0.687 13.7 -- 0.934 1.41 -- -- 0.867 21.2 68 1198 -- --
312.56 0.826 13.7 0.531 -- -- -- -- 0.917 -- -- -- -- --
291.54 0.799 13.7 -- 0.725 -- -- -- 0.867 19.8 -- -- -- --
249.47 0.736 13.6 -- -- 1.49 -- -- 1.08 -- 74 1387 -- --
320 0.835 13.7 -- -- -- -- -- 0.858 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.00 humidity 80 1440 < th dose independent rect. 5 9
13 192.35 humidity 80 1440 < th dose independent sin 4 NA
14 192.40 humidity 80 1440 > th dose independent rect. 5 9
22 193.33 humidity 70 1440 > th dose independent rect. 18 20
38 194.16 humidity 80 1440 > th dose independent sin 4 NA
53 195.93 humidity 80 1440 < th dose dependent sin 9 NA
66 196.53 humidity 90 720 < th dose dependent rect. 18 6
69 196.66 humidity 80 1440 < th dose dependent rect. 17 19
74 196.85 humidity 80 720 < th dose dependent rect. 18 14
80 197.00 humidity 70 1440 < th dose independent rect. 18 19
99 197.96 humidity 80 720 < th dose dependent rect. 18 8
107 198.13 humidity 70 1440 > th dose independent rect. 9 4
131 199.15 humidity 50 720 > th dose dependent rect. 17 8
137 199.29 humidity 60 1440 > th dose dependent rect. 5 9
164 199.91 humidity 80 720 < th dose dependent rect. 20 1
166 199.96 humidity 90 1440 < th dose dependent rect. 2 12
179 200.22 humidity 90 1440 < th dose dependent sin 4 NA
213 200.84 humidity 60 1440 > th dose dependent sin 2 NA
220 200.89 humidity 70 720 > th dose dependent rect. 18 5
226 201.01 humidity 70 1440 > th dose independent rect. 9 18
227 201.01 humidity 70 1440 > th dose independent rect. 9 22
232 201.03 humidity 70 1440 > th dose independent rect. 9 16
235 201.05 humidity 70 1440 > th dose independent rect. 9 12
237 201.06 humidity 70 1440 > th dose independent rect. 9 14
241 201.09 humidity 70 1440 < th dose independent rect. 10 3
280 201.77 humidity 50 1440 > th dose dependent rect. 16 22
283 201.79 humidity 90 1440 < th dose dependent rect. 2 21
292 201.87 humidity 50 1440 > th dose dependent rect. 2 19
304 201.93 humidity 50 1440 > th dose dependent rect. 18 21
309 201.98 humidity 70 1440 < th dose independent rect. 9 22
316 202.04 humidity 70 1440 < th dose independent rect. 9 11
374 202.23 humidity 70 1440 < th dose independent rect. 11 1
385 202.29 humidity 90 1440 < th dose dependent rect. 22 23
404 202.37 humidity 70 1440 > th dose independent rect. 6 21
406 202.38 humidity 70 1440 > th dose independent rect. 6 19
411 202.39 humidity 70 1440 > th dose independent rect. 22 23
416 202.41 humidity 70 1440 > th dose independent no NA NA
417 202.41 humidity 70 1440 > th dose independent rect. 6 15
418 202.41 humidity 70 1440 > th dose independent rect. 6 17
422 202.41 humidity 70 1440 > th dose independent rect. 24 21
425 202.41 humidity 70 1440 > th dose independent rect. 2 23
440 202.43 humidity 70 1440 > th dose independent rect. 2 19
480 202.46 humidity 90 1440 < th dose dependent no NA NA
499 202.58 humidity 50 1440 > th dose dependent rect. 2 15
512 202.62 humidity 70 1440 > th dose independent rect. 11 1
522 202.66 humidity 90 1440 < th dose dependent rect. 5 23
541 202.74 humidity 60 1440 > th dose dependent rect. 10 3
564 202.86 humidity 50 1440 > th dose dependent rect. 5 23
597 203.00 humidity 50 1440 > th dose dependent no NA NA
599 203.00 humidity 50 1440 > th dose dependent rect. 13 23
661 203.22 humidity 80 1440 < th dose independent rect. 1 20
685 203.28 humidity 90 1440 < th dose dependent rect. 9 23
695 203.33 humidity 60 1440 > th dose dependent rect. 11 1
732 203.47 humidity 70 720 > th dose dependent rect. 19 2
747 203.54 humidity 70 1440 > th dose independent sin 9 NA
810 203.67 humidity 70 1440 < th dose independent no NA NA
813 203.67 humidity 70 1440 < th dose independent rect. 6 14
922 203.80 humidity 50 1440 > th dose dependent rect. 9 23