Os03g0305000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AMP-binding protein.
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Os03g0305000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AMP-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.84 | 0.469 | 13.3 | -0.466 | 2.14 | -1.96 | 1.91 | 2.34 | -0.466 | 7.03 | 13.42 | 164 | 12.3 | 14 |
| 103.34 | 0.473 | 13.3 | -0.642 | 2.23 | -1.79 | 1 | -- | -0.504 | 6.99 | 12.32 | 123 | 12.8 | 13.8 |
| 102.07 | 0.471 | 13.3 | -0.66 | 1.69 | -2.29 | -- | 0.00876 | -0.543 | 6.36 | 7.732 | 204 | 12.1 | 13.6 |
| 102.04 | 0.47 | 13.3 | -0.649 | 1.67 | -2.3 | -- | -- | -0.542 | 6.37 | 7.571 | 202 | 12.1 | 13.6 |
| 116.85 | 0.503 | 13.3 | -0.533 | -- | -3.71 | -- | 0.0357 | -0.497 | -- | 2.139 | 275 | 11.5 | 11.8 |
| 138.45 | 0.552 | 13.3 | -0.862 | 3.59 | -- | 1.02 | -- | -0.709 | 7.34 | -- | -- | -- | -- |
| 141.27 | 0.557 | 13.3 | -0.84 | 3.59 | -- | -- | -- | -0.711 | 7.33 | -- | -- | -- | -- |
| 111.76 | 0.492 | 13.3 | -0.549 | -- | -3.72 | -- | -- | -0.543 | -- | 2.217 | 291 | 11.1 | 12.5 |
| 112.95 | 0.495 | 13.3 | -- | 1.7 | -2.32 | -- | -- | -0.485 | 6.51 | 9.313 | 196 | 12.2 | 13.7 |
| 825.36 | 1.34 | 13.4 | -0.779 | -- | -- | -- | -- | -0.651 | -- | -- | -- | -- | -- |
| 159.86 | 0.591 | 13.3 | -- | 3.58 | -- | -- | -- | -0.617 | 7.35 | -- | -- | -- | -- |
| 117.99 | 0.506 | 13.3 | -- | -- | -3.82 | -- | -- | -0.51 | -- | 3.812 | 317 | 10.7 | 12.7 |
| 841.38 | 1.35 | 13.3 | -- | -- | -- | -- | -- | -0.564 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.55 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 25 | 108.05 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 14 |
| 71 | 111.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 73 | 111.25 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 20 |
| 86 | 111.63 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 14 |
| 94 | 111.89 | radiation | 1.0 | 90 | > th | dose independent | rect. | 13 | 6 |
| 115 | 112.19 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 120 | 112.29 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 19 | 18 |
| 128 | 112.54 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 151 | 112.97 | temperature | 30.0 | 270 | < th | dose dependent | sin | 20 | NA |
| 153 | 113.05 | temperature | 30.0 | 90 | < th | dose dependent | sin | 18 | NA |
| 159 | 113.15 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 21 |
| 160 | 113.20 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 165 | 113.28 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 5 |
| 172 | 113.44 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 181 | 113.56 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 198 | 113.85 | temperature | 25.0 | 90 | > th | dose independent | rect. | 13 | 5 |
| 211 | 114.01 | temperature | 10.0 | 90 | > th | dose dependent | sin | 17 | NA |
| 223 | 114.15 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 20 |
| 232 | 114.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 234 | 114.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 253 | 114.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 256 | 114.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 258 | 114.67 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 2 |
| 260 | 114.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 270 | 114.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 2 |
| 271 | 114.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 276 | 114.79 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 20 |
| 279 | 114.81 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 19 |
| 296 | 114.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 21 |
| 297 | 114.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 21 |
| 312 | 115.04 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 321 | 115.11 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 339 | 115.25 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 17 | 20 |
| 340 | 115.25 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 17 | 20 |
| 341 | 115.27 | humidity | 90.0 | 90 | < th | dose independent | rect. | 13 | 5 |
| 349 | 115.30 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 391 | 115.53 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 20 |
| 413 | 115.62 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 21 |
| 426 | 115.66 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 443 | 115.70 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 21 |
| 495 | 115.91 | wind | 1.0 | 90 | > th | dose independent | rect. | 17 | 20 |
| 511 | 116.00 | radiation | 1.0 | 270 | > th | dose independent | rect. | 13 | 2 |
| 528 | 116.07 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 544 | 116.17 | radiation | 40.0 | 30 | < th | dose independent | rect. | 13 | 6 |
| 549 | 116.21 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 21 |
| 550 | 116.22 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 20 |
| 577 | 116.32 | wind | 1.0 | 270 | > th | dose dependent | rect. | 13 | 2 |
| 594 | 116.40 | humidity | 90.0 | 270 | < th | dose independent | rect. | 12 | 3 |
| 663 | 116.69 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 692 | 116.83 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 4 |
| 724 | 116.98 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 739 | 117.05 | temperature | 20.0 | 10 | > th | dose independent | rect. | 13 | 6 |
| 750 | 117.08 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 758 | 117.13 | wind | 9.0 | 10 | < th | dose independent | rect. | 13 | 6 |
| 805 | 117.30 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 13 | 6 |
| 806 | 117.30 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 13 | 6 |
| 853 | 117.43 | wind | 1.0 | 90 | > th | dose dependent | rect. | 13 | 4 |
| 877 | 117.47 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 10 |
| 880 | 117.47 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 900 | 117.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 953 | 117.59 | wind | 1.0 | 10 | > th | dose independent | rect. | 13 | 6 |
| 959 | 117.61 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 13 | 6 |
| 992 | 117.66 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 10 |