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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0303100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1645 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.54 (0.0465) R2 : 0.852
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.17 (0.115) R2dC : 0.689 R2C : 0.792
β3 : -2.4 (0.168) R2dE : 0.0514 R2E : 0.15
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.433 (0.0976) R2dN8 : 0.00852 R2N8 : 0.00257
σ : 0.867
deviance : 342.57
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_____
C
peak time of C : 10.6
E
wheather : radiation
threshold : 0.98
memory length : 14
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 19.1
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
336.31 0.862 6.54 0.12 5.2 -2.05 -0.771 2 0.444 10.5 0.9779 15 19.1 --
337.71 0.862 6.54 0.122 5.16 -2.4 -1.07 -- 0.445 10.5 0.9779 15 19.1 --
333.35 0.857 6.55 0.0984 5.19 -2.33 -- 2.7 0.436 10.6 0.98 14 19.1 --
342.4 0.867 6.54 0.0804 5.17 -2.39 -- -- 0.442 10.6 0.98 14 19.1 --
441.47 0.984 6.69 0.145 -- -5.14 -- 0.745 0.371 -- 19.98 2 7.46 --
451.34 0.996 6.53 0.222 5.52 -- -0.819 -- 0.46 10.8 -- -- -- --
454.15 0.998 6.53 0.189 5.53 -- -- -- 0.458 10.8 -- -- -- --
432.66 0.969 6.68 0.155 -- -5.33 -- -- 0.388 -- 46.74 2 7.35 --
342.57 0.867 6.54 -- 5.17 -2.4 -- -- 0.433 10.6 0.98 14 19.1 --
2347.47 2.26 6.68 0.0739 -- -- -- -- 0.422 -- -- -- -- --
455.09 0.998 6.54 -- 5.53 -- -- -- 0.437 10.8 -- -- -- --
433.29 0.969 6.69 -- -- -5.32 -- -- 0.37 -- 46.66 2 7.36 --
2347.61 2.26 6.68 -- -- -- -- -- 0.414 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 337.69 radiation 1.0 10 < th dose dependent sin 1 NA
3 344.86 radiation 1.0 10 > th dose independent rect. 5 11
14 345.57 radiation 1.0 10 < th dose independent sin 1 NA
19 347.93 radiation 20.0 10 < th dose dependent rect. 12 17
20 348.00 radiation 1.0 10 > th dose independent sin 2 NA
40 352.41 radiation 20.0 10 < th dose dependent rect. 10 19
41 352.64 radiation 1.0 90 < th dose dependent rect. 1 18
46 353.93 radiation 1.0 10 < th dose dependent rect. 2 17
54 355.93 radiation 1.0 90 < th dose independent rect. 1 18
57 356.18 radiation 1.0 10 < th dose independent rect. 2 18
73 357.84 radiation 10.0 10 < th dose dependent rect. 8 22
179 368.59 radiation 10.0 10 < th dose independent rect. 12 17
182 368.70 radiation 10.0 10 < th dose dependent rect. 15 23
203 369.14 radiation 10.0 10 < th dose dependent no NA NA
207 369.25 radiation 10.0 10 < th dose dependent rect. 13 23
250 370.80 radiation 1.0 10 < th dose independent rect. 1 23
274 371.70 radiation 1.0 10 < th dose independent rect. 7 23
321 373.35 radiation 1.0 10 < th dose dependent rect. 1 23
329 373.58 radiation 1.0 10 > th dose independent no NA NA
330 373.58 radiation 1.0 10 < th dose independent no NA NA
392 373.58 radiation 1.0 10 < th dose independent rect. 13 23
393 373.58 radiation 1.0 10 < th dose independent rect. 15 23
520 376.14 radiation 1.0 30 < th dose independent rect. 17 23
521 376.21 radiation 1.0 10 < th dose dependent rect. 2 12
576 377.44 radiation 1.0 10 < th dose independent rect. 2 12
590 377.91 temperature 10.0 10 > th dose dependent rect. 5 20
617 379.06 radiation 20.0 90 < th dose independent rect. 15 14
631 379.28 radiation 1.0 10 < th dose dependent rect. 17 23
647 379.63 radiation 10.0 10 < th dose dependent rect. 21 23
653 379.88 humidity 50.0 10 > th dose independent rect. 16 13
666 379.97 radiation 40.0 720 < th dose dependent rect. 15 4
683 380.46 radiation 1.0 10 < th dose independent rect. 15 21
701 380.56 radiation 1.0 10 < th dose dependent rect. 2 10
726 380.87 radiation 1.0 10 < th dose independent rect. 21 23
746 381.37 radiation 1.0 10 < th dose dependent rect. 2 4
755 381.68 radiation 1.0 10 < th dose independent rect. 2 10
774 382.12 radiation 1.0 10 < th dose dependent rect. 2 6
808 382.92 radiation 1.0 10 < th dose independent rect. 23 23
811 382.96 radiation 1.0 10 < th dose independent rect. 2 4
823 383.21 radiation 1.0 10 < th dose independent rect. 2 6
829 383.32 humidity 50.0 90 > th dose independent rect. 15 14
838 383.62 temperature 10.0 10 > th dose dependent rect. 5 11
839 383.64 precipitation 0.1 10 < th dose independent rect. 5 21
843 383.64 precipitation 0.1 10 < th dose dependent rect. 5 21
861 383.88 radiation 1.0 720 > th dose independent rect. 10 6
868 383.97 radiation 10.0 10 < th dose dependent rect. 23 23
879 384.23 radiation 30.0 720 < th dose independent rect. 15 4
892 384.42 wind 1.0 90 > th dose independent rect. 1 4
919 384.99 atmosphere 1015.0 10 < th dose dependent rect. 2 3
942 385.54 radiation 40.0 270 < th dose independent rect. 14 13
977 386.15 atmosphere 1000.0 10 > th dose independent rect. 5 11
980 386.32 wind 9.0 10 < th dose independent rect. 2 3
981 386.32 temperature 10.0 10 > th dose independent rect. 2 3
983 386.32 temperature 30.0 10 < th dose independent rect. 2 3
984 386.32 humidity 50.0 10 > th dose independent rect. 2 3
988 386.32 atmosphere 995.0 10 > th dose independent rect. 2 3
989 386.32 atmosphere 1010.0 10 < th dose independent rect. 2 3
996 386.32 temperature 10.0 10 > th dose independent rect. 5 21
997 386.32 radiation 20.0 10 < th dose dependent rect. 2 3