Os03g0302700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0302700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.86 | 0.311 | 9.77 | -0.193 | 0.942 | -0.588 | -0.926 | -0.0864 | -0.251 | 13.1 | 24.7 | 252 | -- | -- |
| 43.9 | 0.309 | 9.77 | -0.216 | 0.937 | -0.594 | -0.906 | -- | -0.263 | 13.1 | 24.6 | 246 | -- | -- |
| 47.16 | 0.32 | 9.77 | -0.301 | 0.954 | -0.595 | -- | 0.201 | -0.272 | 13.1 | 24.65 | 252 | -- | -- |
| 46.52 | 0.318 | 9.78 | -0.268 | 0.928 | -0.593 | -- | -- | -0.287 | 13.5 | 24.34 | 191 | -- | -- |
| 93.11 | 0.449 | 9.77 | -0.273 | -- | -0.686 | -- | 0.47 | -0.308 | -- | 24.8 | 135 | -- | -- |
| 62.74 | 0.371 | 9.71 | -0.0407 | 1.19 | -- | -0.752 | -- | 0.0396 | 14.1 | -- | -- | -- | -- |
| 64.87 | 0.377 | 9.71 | -0.0627 | 1.19 | -- | -- | -- | 0.0355 | 14.1 | -- | -- | -- | -- |
| 89.67 | 0.443 | 9.77 | -0.273 | -- | -0.756 | -- | -- | -0.208 | -- | 25.72 | 116 | -- | -- |
| 48.1 | 0.323 | 9.76 | -- | 0.951 | -0.549 | -- | -- | -0.226 | 13.5 | 24.5 | 191 | -- | -- |
| 149.29 | 0.571 | 9.72 | -0.112 | -- | -- | -- | -- | 0.00719 | -- | -- | -- | -- | -- |
| 64.97 | 0.377 | 9.71 | -- | 1.19 | -- | -- | -- | 0.0424 | 14.1 | -- | -- | -- | -- |
| 89.76 | 0.441 | 9.82 | -- | -- | -0.854 | -- | -- | -0.414 | -- | 24.8 | 73 | -- | -- |
| 149.62 | 0.571 | 9.72 | -- | -- | -- | -- | -- | 0.0197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 2 | 33.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 3 | 33.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 58 | 37.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 82 | 38.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 95 | 38.59 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 19 |
| 99 | 38.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 101 | 38.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 138 | 39.69 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 140 | 39.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 220 | 41.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 273 | 41.93 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 22 |
| 288 | 42.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 331 | 42.59 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 22 |
| 345 | 42.79 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 393 | 43.23 | humidity | 60 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 409 | 43.36 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 434 | 43.50 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 21 |
| 435 | 43.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 503 | 44.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 516 | 44.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 538 | 44.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 553 | 44.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 555 | 44.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 604 | 44.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 608 | 44.60 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 615 | 44.62 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 631 | 44.69 | radiation | 1 | 270 | < th | dose independent | sin | 1 | NA |
| 677 | 44.88 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 720 | 45.02 | radiation | 1 | 270 | < th | dose dependent | sin | 1 | NA |
| 732 | 45.07 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 787 | 45.29 | humidity | 50 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 788 | 45.30 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 795 | 45.32 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 798 | 45.33 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 807 | 45.36 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 817 | 45.42 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 9 |
| 910 | 45.75 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 922 | 45.78 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 8 |
| 935 | 45.82 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 971 | 45.91 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 998 | 45.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 999 | 45.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |