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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0301000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0216) R2 : 0.0247
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.155 (0.0455) R2dN8 : 0.0318 R2N8 : 0.0247
σ : 0.407
deviance : 76.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.9 0.364 3.3 0.524 0.334 -0.713 0.626 2.85 0.185 5.45 52.13 4068 -- --
62.95 0.372 3.35 0.459 0.36 0.203 0.726 -- 0.214 5.02 72.3 1086 -- --
60.8 0.363 3.31 0.517 0.345 -0.633 -- 2.68 0.171 5.64 52.84 4071 -- --
64.16 0.373 3.36 0.493 0.327 -0.127 -- -- 0.178 5.79 64.24 1106 -- --
66.76 0.381 3.31 0.519 -- -0.618 -- 2.65 0.186 -- 52.6 4122 -- --
63.47 0.373 3.35 0.461 0.325 -- 0.649 -- 0.202 5.36 -- -- -- --
64.43 0.376 3.35 0.463 0.333 -- -- -- 0.199 5.8 -- -- -- --
66.7 0.38 3.36 0.48 -- -0.363 -- -- 0.213 -- 109.6 535 -- --
69.79 0.391 3.36 -- 0.363 0.16 -- -- 0.157 5.42 70.31 1075 -- --
70.17 0.391 3.36 0.474 -- -- -- -- 0.207 -- -- -- -- --
70.09 0.392 3.37 -- 0.34 -- -- -- 0.148 5.74 -- -- -- --
72.79 0.397 3.37 -- -- -0.349 -- -- 0.16 -- 121.4 511 -- --
76.08 0.407 3.37 -- -- -- -- -- 0.155 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.33 atmosphere 1010.0 30 < th dose independent rect. 10 1
2 58.43 radiation 30.0 30 < th dose independent rect. 10 1
4 58.48 temperature 20.0 30 > th dose independent rect. 10 1
6 58.50 atmosphere 1005.0 30 > th dose independent rect. 10 1
8 58.52 radiation 40.0 30 < th dose dependent rect. 10 1
9 58.53 temperature 10.0 30 > th dose dependent rect. 10 1
12 58.54 humidity 50.0 30 > th dose dependent rect. 10 1
13 58.54 precipitation 0.1 720 > th dose dependent rect. 19 2
14 58.55 temperature 30.0 30 < th dose independent rect. 10 1
15 58.55 atmosphere 995.0 30 > th dose dependent rect. 10 1
16 58.56 wind 5.0 30 < th dose independent rect. 10 1
19 58.56 radiation 10.0 30 > th dose independent rect. 10 1
21 58.57 wind 1.0 30 > th dose independent rect. 10 1
22 58.57 wind 1.0 30 < th dose independent rect. 10 1
23 58.57 temperature 10.0 30 > th dose independent rect. 10 1
25 58.57 temperature 10.0 1440 > th dose independent rect. 11 1
29 58.57 humidity 50.0 30 > th dose independent rect. 10 1
30 58.57 humidity 70.0 30 < th dose independent rect. 10 1
31 58.57 humidity 90.0 30 < th dose independent rect. 10 1
33 58.57 atmosphere 995.0 1440 > th dose independent rect. 11 1
38 58.57 precipitation 0.1 30 < th dose independent rect. 10 1
39 58.57 precipitation 0.1 1440 < th dose independent rect. 11 1
40 58.57 temperature 10.0 30 > th dose independent rect. 11 23
41 58.57 temperature 10.0 1440 > th dose independent rect. 12 23
44 58.57 wind 1.0 30 < th dose dependent rect. 10 1
45 58.57 wind 7.0 30 < th dose dependent rect. 10 1
47 58.57 precipitation 0.1 30 < th dose dependent rect. 10 1
48 58.57 precipitation 0.1 1440 < th dose dependent rect. 11 1
56 58.67 humidity 70.0 30 < th dose dependent rect. 10 1
60 58.70 atmosphere 1015.0 30 < th dose dependent rect. 10 1
64 58.73 precipitation 0.1 720 > th dose independent rect. 18 3
66 58.73 precipitation 0.1 720 > th dose dependent rect. 18 7
67 58.74 radiation 1.0 30 > th dose dependent rect. 10 1
81 58.84 precipitation 0.1 720 > th dose independent rect. 18 5
82 58.84 precipitation 0.1 720 > th dose independent rect. 18 7
83 58.84 wind 1.0 30 > th dose dependent rect. 10 1
137 59.24 precipitation 0.1 720 > th dose independent rect. 21 2
138 59.24 precipitation 0.1 720 > th dose dependent rect. 21 2
149 59.30 wind 7.0 720 > th dose independent rect. 21 1
158 59.37 wind 7.0 720 > th dose dependent rect. 21 1
181 59.53 precipitation 0.1 720 < th dose independent sin 13 NA
182 59.53 precipitation 0.1 720 < th dose dependent sin 13 NA
187 59.56 wind 7.0 720 > th dose dependent rect. 19 13
188 59.57 wind 7.0 720 > th dose dependent rect. 19 7
206 59.63 precipitation 0.1 4320 > th dose independent rect. 21 2
211 59.65 precipitation 0.1 4320 < th dose independent rect. 21 2
214 59.65 precipitation 0.1 4320 < th dose dependent rect. 21 2
230 59.70 precipitation 0.1 4320 < th dose independent rect. 20 6
231 59.70 wind 9.0 30 < th dose independent rect. 11 23
232 59.70 precipitation 0.1 4320 > th dose dependent rect. 21 2
234 59.70 precipitation 0.1 4320 < th dose dependent rect. 20 6
264 59.76 precipitation 0.1 1440 < th dose independent rect. 19 1
265 59.76 precipitation 0.1 1440 < th dose dependent rect. 19 1
272 59.79 precipitation 0.1 720 > th dose independent sin 14 NA
277 59.80 radiation 10.0 43200 < th dose dependent rect. 1 1
279 59.81 precipitation 0.1 720 < th dose independent rect. 21 8
281 59.81 precipitation 0.1 720 < th dose dependent rect. 21 8
283 59.85 wind 7.0 720 > th dose independent rect. 19 13
286 59.86 wind 7.0 720 > th dose independent rect. 19 10
291 59.87 wind 7.0 720 > th dose independent rect. 19 7
302 59.90 humidity 50.0 4320 < th dose independent sin 5 NA
306 59.90 humidity 50.0 4320 > th dose independent rect. 7 10
308 59.90 humidity 50.0 4320 > th dose independent rect. 4 13
319 59.92 humidity 50.0 4320 > th dose independent rect. 19 22
323 59.93 humidity 50.0 4320 > th dose independent rect. 21 20
327 59.94 humidity 50.0 4320 < th dose independent rect. 10 7
345 59.95 humidity 50.0 4320 > th dose independent sin 2 NA
361 59.99 atmosphere 1000.0 43200 < th dose independent rect. 4 1
367 60.00 wind 9.0 43200 > th dose dependent rect. 20 1
374 60.01 humidity 50.0 4320 > th dose independent rect. 7 15
375 60.01 humidity 50.0 4320 > th dose independent rect. 3 17
416 60.03 atmosphere 1000.0 43200 > th dose independent rect. 4 1
450 60.03 humidity 50.0 4320 > th dose independent rect. 8 21
458 60.03 humidity 50.0 4320 > th dose independent rect. 15 23
464 60.04 humidity 50.0 4320 > th dose independent no NA NA
470 60.04 humidity 90.0 720 < th dose independent rect. 14 10
510 60.05 atmosphere 1000.0 43200 > th dose independent rect. 13 1
548 60.06 humidity 50.0 4320 < th dose independent rect. 15 23
549 60.06 atmosphere 995.0 30 > th dose independent rect. 11 23
590 60.09 humidity 90.0 720 < th dose independent rect. 11 14
592 60.09 humidity 50.0 4320 > th dose independent rect. 13 23
594 60.09 atmosphere 1005.0 43200 < th dose dependent rect. 11 1
597 60.10 humidity 50.0 4320 < th dose independent no NA NA
598 60.10 atmosphere 1000.0 43200 > th dose independent rect. 11 3
742 60.11 atmosphere 1000.0 43200 < th dose independent rect. 13 1
748 60.11 atmosphere 1000.0 43200 < th dose independent rect. 11 4
767 60.12 humidity 50.0 4320 < th dose independent rect. 13 23
776 60.13 atmosphere 1000.0 43200 > th dose independent rect. 4 11
777 60.13 atmosphere 1000.0 43200 < th dose independent rect. 4 11
817 60.15 precipitation 0.1 720 < th dose independent rect. 17 8
828 60.15 precipitation 0.1 720 < th dose dependent rect. 17 8
852 60.17 atmosphere 1000.0 43200 > th dose independent rect. 4 8
896 60.18 precipitation 0.1 720 < th dose independent rect. 17 16
899 60.18 precipitation 0.1 720 < th dose dependent rect. 17 16
932 60.20 atmosphere 1000.0 43200 > th dose independent sin 2 NA
977 60.21 atmosphere 1000.0 43200 < th dose independent sin 2 NA
989 60.21 humidity 90.0 720 > th dose independent rect. 14 10