Os03g0300700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Retrotransposon gag protein family protein.
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Os03g0300700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Retrotransposon gag protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.63 | 0.284 | 10.4 | 0.729 | 1.18 | -0.509 | 0.318 | -0.788 | 0.201 | 17 | 999.3 | 5138 | -- | -- |
| 37.03 | 0.283 | 10.4 | 0.771 | 1.2 | -0.602 | 0.344 | -- | 0.198 | 17 | 999 | 5077 | -- | -- |
| 36.72 | 0.282 | 10.4 | 0.734 | 1.18 | -0.514 | -- | -0.805 | 0.204 | 17 | 998.9 | 5174 | -- | -- |
| 37.17 | 0.284 | 10.4 | 0.762 | 1.19 | -0.64 | -- | -- | 0.198 | 17 | 999 | 5201 | -- | -- |
| 110.09 | 0.489 | 10.4 | 0.684 | -- | -0.492 | -- | -0.909 | 0.176 | -- | 999 | 5210 | -- | -- |
| 47.88 | 0.324 | 10.4 | 0.652 | 1.18 | -- | 0.34 | -- | 0.254 | 17 | -- | -- | -- | -- |
| 48.18 | 0.325 | 10.4 | 0.653 | 1.18 | -- | -- | -- | 0.256 | 17 | -- | -- | -- | -- |
| 110.72 | 0.49 | 10.4 | 0.727 | -- | -0.638 | -- | -- | 0.171 | -- | 999 | 5170 | -- | -- |
| 52.16 | 0.336 | 10.4 | -- | 1.17 | -0.511 | -- | -- | 0.128 | 17 | 999 | 5221 | -- | -- |
| 121.55 | 0.515 | 10.4 | 0.61 | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
| 59.42 | 0.361 | 10.4 | -- | 1.17 | -- | -- | -- | 0.183 | 17 | -- | -- | -- | -- |
| 124.05 | 0.519 | 10.4 | -- | -- | -0.513 | -- | -- | 0.101 | -- | 998.9 | 5166 | -- | -- |
| 131.38 | 0.535 | 10.4 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 32.79 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 33.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 4 | 33.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 5 | 34.68 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 6 | 34.84 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 10 | 35.02 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 15 | 35.11 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 18 | 35.17 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 19 | 35.17 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 21 | 35.20 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 26 | 35.22 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 17 |
| 34 | 35.31 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 35 | 35.32 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 37 | 35.32 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 15 |
| 50 | 35.40 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 55 | 35.42 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 93 | 35.61 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 97 | 35.65 | wind | 9.0 | 4320 | > th | dose independent | rect. | 19 | 2 |
| 108 | 35.74 | wind | 9.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 110 | 35.74 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 12 |
| 123 | 35.79 | temperature | 25.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 133 | 35.83 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 7 |
| 135 | 35.84 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 146 | 35.87 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 149 | 35.87 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 187 | 35.87 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 191 | 35.88 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 270 | 35.92 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 336 | 36.05 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 404 | 36.20 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 425 | 36.27 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 450 | 36.32 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 505 | 36.40 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 519 | 36.44 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 553 | 36.51 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 563 | 36.53 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 597 | 36.62 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 5 | 10 |
| 605 | 36.63 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 648 | 36.70 | atmosphere | 1000.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 654 | 36.71 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 680 | 36.74 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 693 | 36.75 | atmosphere | 995.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 721 | 36.78 | temperature | 25.0 | 10 | < th | dose dependent | sin | 16 | NA |
| 727 | 36.79 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 765 | 36.84 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 781 | 36.85 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 802 | 36.86 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 804 | 36.86 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 822 | 36.87 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 823 | 36.87 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 825 | 36.88 | atmosphere | 995.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 828 | 36.88 | atmosphere | 1000.0 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 900 | 36.93 | atmosphere | 995.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 937 | 36.94 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 960 | 36.97 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 974 | 36.99 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 7 | 1 |