Os03g0300400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogen-related protein (JIOsPR10).
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Os03g0300400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogen-related protein (JIOsPR10).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 603.39 | 1.15 | 10.6 | -3.58 | 1.24 | -1.22 | -3 | 10.9 | 0.387 | 3.95 | 28.83 | 267 | -- | -- |
| 662.29 | 1.2 | 10.4 | -2.09 | 0.852 | -3.27 | -0.495 | -- | 0.941 | 3.33 | 18.41 | 2327 | -- | -- |
| 621.92 | 1.16 | 10.6 | -3.52 | 1.25 | -1.29 | -- | 10.7 | 0.405 | 4.65 | 29.79 | 444 | -- | -- |
| 656.8 | 1.19 | 10.3 | -2.05 | 0.901 | -3.2 | -- | -- | 0.97 | 4.53 | 18.67 | 2311 | -- | -- |
| 668.52 | 1.2 | 10.6 | -3.93 | -- | -1.26 | -- | 11.1 | 0.389 | -- | 39.78 | 1205 | -- | -- |
| 748.55 | 1.28 | 10.3 | -1.24 | 0.925 | -- | 0.177 | -- | 1.2 | 4.2 | -- | -- | -- | -- |
| 748.63 | 1.28 | 10.3 | -1.24 | 0.926 | -- | -- | -- | 1.2 | 4.15 | -- | -- | -- | -- |
| 685.77 | 1.22 | 10.4 | -2.91 | -- | -2.58 | -- | -- | 0.898 | -- | 14.24 | 28279 | -- | -- |
| 753.41 | 1.28 | 10.3 | -- | 0.838 | -2.28 | -- | -- | 1.21 | 4.7 | 17.9 | 2283 | -- | -- |
| 795.07 | 1.32 | 10.3 | -1.2 | -- | -- | -- | -- | 1.22 | -- | -- | -- | -- | -- |
| 789.15 | 1.31 | 10.3 | -- | 0.902 | -- | -- | -- | 1.34 | 4.18 | -- | -- | -- | -- |
| 783.79 | 1.3 | 10.3 | -- | -- | -2.52 | -- | -- | 1.29 | -- | 12.97 | 6774 | -- | -- |
| 833.22 | 1.35 | 10.3 | -- | -- | -- | -- | -- | 1.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 569.19 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 569.96 | humidity | 60 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 56 | 597.84 | wind | 7 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 71 | 600.22 | wind | 9 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 73 | 600.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 74 | 600.62 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 80 | 600.69 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 82 | 600.86 | wind | 9 | 4320 | > th | dose dependent | rect. | 17 | 7 |
| 91 | 602.85 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 102 | 604.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 103 | 604.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 109 | 604.60 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 112 | 604.88 | wind | 9 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 114 | 604.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 115 | 604.94 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 116 | 604.95 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 126 | 605.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 127 | 605.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 169 | 606.89 | wind | 7 | 1440 | > th | dose independent | rect. | 22 | 12 |
| 178 | 607.23 | humidity | 90 | 14400 | > th | dose independent | rect. | 24 | 7 |
| 180 | 607.58 | wind | 7 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 189 | 607.89 | wind | 7 | 1440 | < th | dose independent | rect. | 22 | 12 |
| 194 | 608.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 206 | 609.08 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 218 | 609.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 227 | 609.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 235 | 609.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 254 | 610.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 271 | 610.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 293 | 611.50 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 297 | 611.69 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 302 | 611.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 15 |
| 317 | 612.10 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 344 | 612.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 350 | 612.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 356 | 612.64 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 436 | 613.56 | temperature | 15 | 1440 | > th | dose dependent | sin | 8 | NA |
| 437 | 613.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 461 | 613.77 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 495 | 614.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 724 | 615.63 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 732 | 615.75 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 766 | 616.03 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 805 | 616.29 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 928 | 617.41 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 940 | 617.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 19 |