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Os03g0300200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin-specific protease 16.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.5 (0.0229) R2 : 0.804
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.81 (0.0683) R2dC : 0.42 R2C : 0.662
β3 : -1.48 (0.101) R2dE : 0.129 R2E : 0.374
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.266 (0.0483) R2dN8 : 0.0155 R2N8 : 0.00527
σ : 0.431
deviance : 85.69
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_____
C
peak time of C : 15.4
E
wheather : temperature
threshold : 32
memory length : 296
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.73
open length of G : 2.33

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.1 0.418 8.5 0.327 1.83 -1.51 0.5 -0.973 0.279 15.4 31.27 286 2.9 2.13
80.61 0.418 8.5 0.351 1.82 -1.49 0.628 -- 0.284 15.4 31.96 285 2.9 2.2
79.69 0.416 8.5 0.338 1.81 -1.47 -- -1.13 0.292 15.3 32.54 289 2.9 2.13
82.54 0.423 8.5 0.348 1.82 -1.46 -- -- 0.292 15.4 32.4 288 2.85 2.19
191.85 0.645 8.46 0.303 -- -1.88 -- -0.88 0.41 -- 66.24 381 2.27 0.933
106.96 0.485 8.52 0.335 2.43 -- 1.04 -- 0.275 16.1 -- -- -- --
110 0.491 8.51 0.347 2.44 -- -- -- 0.281 16.1 -- -- -- --
161.89 0.593 8.46 0.37 -- -1.97 -- -- 0.41 -- 95.84 448 0.0167 2.7
85.69 0.431 8.5 -- 1.81 -1.48 -- -- 0.266 15.4 32 296 2.73 2.33
433.32 0.973 8.5 0.248 -- -- -- -- 0.216 -- -- -- -- --
113.17 0.498 8.52 -- 2.43 -- -- -- 0.242 16.1 -- -- -- --
164.7 0.598 8.49 -- -- -2.08 -- -- 0.343 -- 57.73 446 0.0127 2.69
434.94 0.973 8.51 -- -- -- -- -- 0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.61 temperature 30.0 270 < th dose dependent rect. 3 2
2 79.84 temperature 30.0 90 < th dose dependent rect. 3 5
5 82.40 wind 5.0 90 < th dose independent rect. 3 5
6 82.42 wind 5.0 270 < th dose independent rect. 3 2
7 82.48 wind 1.0 270 > th dose independent rect. 3 2
11 83.15 precipitation 0.1 90 < th dose independent rect. 3 5
12 83.15 precipitation 0.1 90 < th dose dependent rect. 3 5
13 83.32 wind 9.0 90 < th dose independent rect. 8 19
16 83.45 radiation 30.0 90 < th dose independent rect. 3 6
19 83.58 wind 9.0 270 < th dose independent rect. 5 22
21 83.60 temperature 10.0 90 > th dose independent rect. 3 5
23 83.60 temperature 30.0 90 < th dose independent rect. 3 5
24 83.60 humidity 50.0 90 > th dose independent rect. 3 5
26 83.60 atmosphere 995.0 90 > th dose independent rect. 3 5
27 83.60 atmosphere 1015.0 90 < th dose independent rect. 3 5
28 83.60 temperature 10.0 90 > th dose independent rect. 8 19
29 83.65 precipitation 0.1 270 < th dose independent rect. 3 2
30 83.65 precipitation 0.1 270 < th dose dependent rect. 3 2
34 83.78 wind 1.0 270 > th dose independent rect. 2 4
37 83.89 radiation 1.0 270 < th dose dependent rect. 3 2
41 84.02 precipitation 0.1 10 < th dose independent rect. 3 6
42 84.02 precipitation 0.1 10 < th dose dependent rect. 3 6
44 84.07 temperature 10.0 270 > th dose independent rect. 3 2
46 84.07 temperature 30.0 270 < th dose independent rect. 3 2
47 84.07 humidity 50.0 270 > th dose independent rect. 3 2
50 84.07 atmosphere 995.0 270 > th dose independent rect. 3 2
51 84.07 atmosphere 1010.0 270 < th dose independent rect. 3 2
53 84.07 radiation 20.0 270 < th dose independent rect. 3 2
56 84.07 wind 1.0 270 > th dose independent rect. 1 6
57 84.07 temperature 10.0 270 > th dose independent rect. 5 22
59 84.09 radiation 30.0 270 < th dose dependent rect. 3 2
65 84.15 radiation 1.0 270 < th dose dependent rect. 3 9
66 84.16 radiation 1.0 270 < th dose independent rect. 3 2
71 84.20 precipitation 0.1 90 < th dose independent rect. 8 19
72 84.20 precipitation 0.1 90 < th dose dependent rect. 8 19
77 84.32 wind 5.0 270 < th dose independent rect. 1 6
84 84.51 wind 9.0 10 < th dose independent rect. 9 18
97 84.78 temperature 10.0 10 > th dose independent rect. 3 6
99 84.78 temperature 30.0 10 < th dose independent rect. 3 6
100 84.78 humidity 50.0 10 > th dose independent rect. 3 6
102 84.78 atmosphere 995.0 10 > th dose independent rect. 3 6
103 84.78 atmosphere 1015.0 10 < th dose independent rect. 3 6
105 84.78 temperature 10.0 10 > th dose independent rect. 9 18
108 84.83 wind 7.0 270 < th dose independent rect. 6 20
121 84.89 precipitation 0.1 10 < th dose independent rect. 9 18
123 84.89 precipitation 0.1 10 < th dose dependent rect. 9 18
133 85.04 wind 9.0 90 < th dose dependent rect. 8 19
144 85.15 temperature 10.0 1440 > th dose independent rect. 4 6
147 85.15 atmosphere 995.0 1440 > th dose independent rect. 4 6
148 85.15 atmosphere 1015.0 1440 < th dose independent rect. 4 6
149 85.15 temperature 10.0 1440 > th dose independent rect. 10 18
153 85.17 radiation 40.0 90 < th dose dependent rect. 3 6
172 85.23 temperature 10.0 270 > th dose independent rect. 6 20
174 85.31 radiation 1.0 270 < th dose independent rect. 3 9
193 85.39 atmosphere 1000.0 90 > th dose dependent rect. 3 5
195 85.43 atmosphere 995.0 90 > th dose independent rect. 8 19
204 85.54 temperature 10.0 10 > th dose dependent rect. 9 18
211 85.63 wind 9.0 270 < th dose dependent rect. 6 20
238 85.92 atmosphere 1000.0 10 > th dose dependent rect. 3 6
245 85.99 wind 9.0 90 < th dose dependent rect. 3 5
250 86.03 wind 9.0 270 < th dose dependent rect. 3 2
261 86.05 precipitation 0.1 270 < th dose independent rect. 1 6
263 86.05 precipitation 0.1 270 < th dose dependent rect. 1 6
264 86.06 radiation 30.0 270 < th dose dependent rect. 1 7
267 86.07 precipitation 0.1 270 < th dose independent rect. 6 20
269 86.07 precipitation 0.1 270 < th dose dependent rect. 6 20
276 86.20 precipitation 0.1 270 < th dose independent rect. 5 22
277 86.20 precipitation 0.1 270 < th dose dependent rect. 5 22
279 86.21 radiation 20.0 270 < th dose independent rect. 1 7
291 86.31 wind 1.0 270 > th dose independent rect. 13 17
297 86.35 humidity 70.0 270 > th dose independent rect. 1 6
299 86.36 atmosphere 995.0 10 > th dose independent rect. 9 18
303 86.39 temperature 10.0 270 > th dose independent rect. 1 6
305 86.39 temperature 30.0 270 < th dose independent rect. 1 6
306 86.39 humidity 50.0 270 > th dose independent rect. 1 6
308 86.39 atmosphere 995.0 270 > th dose independent rect. 1 6
309 86.39 atmosphere 1015.0 270 < th dose independent rect. 1 6
330 86.52 temperature 15.0 90 > th dose independent rect. 8 7
336 86.56 radiation 1.0 270 > th dose independent sin 3 NA
342 86.64 wind 9.0 270 < th dose dependent rect. 6 7
357 86.75 atmosphere 995.0 270 > th dose dependent rect. 3 2
358 86.76 atmosphere 1000.0 270 > th dose independent rect. 19 7
399 86.90 wind 9.0 10 < th dose dependent rect. 3 6
418 86.95 wind 9.0 1440 < th dose independent rect. 4 5
422 86.95 humidity 50.0 1440 > th dose independent rect. 4 5
457 87.06 precipitation 0.1 90 < th dose independent rect. 8 7
458 87.06 precipitation 0.1 90 < th dose dependent rect. 8 7
474 87.10 temperature 15.0 270 > th dose independent rect. 6 7
480 87.12 temperature 15.0 90 > th dose independent rect. 15 17
496 87.15 atmosphere 1015.0 270 < th dose independent rect. 11 10
507 87.22 humidity 50.0 270 > th dose dependent rect. 3 2
521 87.27 wind 9.0 90 < th dose independent rect. 8 7
522 87.27 wind 1.0 270 > th dose independent rect. 11 10
563 87.35 atmosphere 1015.0 90 < th dose independent rect. 8 7
585 87.44 atmosphere 995.0 90 > th dose independent rect. 8 7
595 87.46 wind 9.0 270 < th dose independent rect. 21 14
600 87.48 radiation 1.0 270 < th dose dependent sin 3 NA
604 87.49 radiation 40.0 90 < th dose independent rect. 15 17
608 87.53 radiation 40.0 90 < th dose independent rect. 13 19
611 87.55 temperature 10.0 270 > th dose independent rect. 11 10
612 87.55 temperature 10.0 270 > th dose independent rect. 21 14
613 87.55 atmosphere 995.0 270 > th dose independent rect. 21 14
625 87.58 atmosphere 1015.0 90 < th dose independent rect. 15 17
627 87.61 radiation 1.0 270 < th dose independent sin 3 NA
630 87.62 temperature 10.0 90 > th dose dependent rect. 8 7
640 87.70 humidity 50.0 270 > th dose independent rect. 21 14
641 87.71 wind 9.0 90 < th dose independent rect. 15 17
642 87.74 precipitation 0.1 90 < th dose independent rect. 15 17
644 87.74 precipitation 0.1 90 < th dose dependent rect. 15 17
661 87.79 humidity 50.0 90 > th dose dependent rect. 3 5
663 87.81 radiation 1.0 270 > th dose independent rect. 6 7
664 87.81 radiation 1.0 90 > th dose independent rect. 8 7
665 87.81 wind 1.0 270 > th dose independent rect. 11 20
666 87.82 radiation 40.0 90 < th dose dependent rect. 3 8
672 87.86 precipitation 0.1 270 < th dose independent rect. 6 8
673 87.86 precipitation 0.1 270 < th dose dependent rect. 6 8
675 87.88 radiation 1.0 270 > th dose independent rect. 9 1
676 87.89 temperature 10.0 270 > th dose dependent rect. 6 6
679 87.90 temperature 10.0 10 > th dose dependent rect. 9 5
680 87.91 humidity 90.0 10 < th dose independent rect. 9 6
681 87.92 temperature 15.0 270 > th dose independent rect. 9 1
692 87.93 temperature 10.0 270 > th dose dependent rect. 9 1
693 87.93 temperature 30.0 90 < th dose dependent rect. 3 14
694 87.94 wind 7.0 270 < th dose independent rect. 6 7
708 87.97 wind 9.0 270 < th dose dependent rect. 8 2
715 87.99 atmosphere 995.0 90 > th dose independent rect. 15 17
723 88.01 atmosphere 995.0 270 > th dose independent rect. 6 20
727 88.02 wind 1.0 270 > th dose independent rect. 10 22
765 88.12 humidity 90.0 90 < th dose independent rect. 8 7
772 88.14 atmosphere 995.0 270 > th dose independent rect. 6 7
773 88.14 atmosphere 1015.0 270 < th dose independent rect. 6 7
782 88.15 temperature 30.0 90 < th dose dependent rect. 3 16
800 88.22 precipitation 0.1 270 < th dose independent rect. 11 10
803 88.22 precipitation 0.1 270 < th dose dependent rect. 11 10
806 88.23 wind 7.0 270 < th dose independent rect. 17 9
814 88.25 temperature 15.0 10 > th dose independent rect. 15 18
819 88.26 temperature 10.0 270 > th dose dependent rect. 21 14
852 88.35 radiation 40.0 10 < th dose dependent rect. 3 6
856 88.36 wind 9.0 270 < th dose dependent rect. 7 4
869 88.39 wind 1.0 270 > th dose independent rect. 2 16
882 88.42 atmosphere 1015.0 10 < th dose independent rect. 15 18
884 88.44 radiation 40.0 270 < th dose independent rect. 15 15
898 88.50 humidity 50.0 270 > th dose independent rect. 6 7
899 88.50 precipitation 0.1 270 < th dose independent rect. 21 14
902 88.50 atmosphere 995.0 270 > th dose dependent rect. 18 8
903 88.50 precipitation 0.1 270 < th dose dependent rect. 21 14
908 88.53 radiation 1.0 10 > th dose independent rect. 9 6
917 88.56 wind 9.0 10 < th dose independent rect. 9 6
926 88.59 precipitation 0.1 10 < th dose independent rect. 15 18
928 88.59 precipitation 0.1 10 < th dose dependent rect. 15 18
932 88.61 temperature 10.0 10 > th dose independent rect. 9 6
934 88.61 atmosphere 995.0 10 > th dose independent rect. 9 6
935 88.61 atmosphere 1015.0 10 < th dose independent rect. 9 6
936 88.61 precipitation 0.1 10 < th dose independent rect. 9 6
940 88.61 precipitation 0.1 10 < th dose dependent rect. 9 6
943 88.62 wind 7.0 270 < th dose independent rect. 9 1
945 88.62 temperature 20.0 270 > th dose independent rect. 20 16
949 88.64 precipitation 0.1 270 < th dose independent rect. 2 15
952 88.64 precipitation 0.1 270 < th dose dependent rect. 2 15
969 88.71 temperature 10.0 270 > th dose independent rect. 17 9
970 88.71 radiation 20.0 270 < th dose independent rect. 17 9
974 88.71 temperature 10.0 270 > th dose independent rect. 2 15
975 88.71 atmosphere 1015.0 270 < th dose independent rect. 2 15
988 88.73 atmosphere 1015.0 90 < th dose independent rect. 8 19
1000 88.77 precipitation 0.1 270 < th dose independent rect. 9 1